View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19697_high_14 (Length: 229)
Name: NF19697_high_14
Description: NF19697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19697_high_14 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 47119254 - 47119485
Alignment:
| Q |
1 |
tgatcaacctccatctgctagagcaaactcagggcgtcctagtggactttctaaagtagttcccttggtcccggctagtgtacctatcacacttaggcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47119254 |
tgatcaacctccatctgctagagcaaactcagggcgtcctagtggactttctaaagtagttcccttggttccggctagtgtacctatcacacttaggcca |
47119353 |
T |
|
| Q |
101 |
gccacttctggtaacattcctcaaacagagtccatttcagatggcagaaaagacagaaggtaatatcnnnnnnnttcttggtcttctttctttgcatttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47119354 |
gccacttctggtaacattcctcaaacagagtccatttcagatggcagaaaagacagaaggtaatatcaaaaaaattcttggtcttctttctttgcatttt |
47119453 |
T |
|
| Q |
201 |
gggtttatatta---ttcttggttattttcta |
229 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |
|
|
| T |
47119454 |
gggtttatattattcttcttggttattttcta |
47119485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University