View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19697_high_3 (Length: 371)
Name: NF19697_high_3
Description: NF19697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19697_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 356
Target Start/End: Complemental strand, 21079450 - 21079098
Alignment:
| Q |
16 |
atgaaggaacttgcaaaaactaatcatcgttttagccnnnnnnntaatcacaagcctatgagacaaataataattttttaaggcaattctagtgtccg-- |
113 |
Q |
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| T |
21079450 |
atgaaggaacttgcaaaaactaatcatcgttttagccaaaaaaataatcacaagcctatgagacaaataata-ttttttaaggcaattctagtgtccgag |
21079352 |
T |
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| Q |
114 |
ttaccaaaaccacgga----------caaaacaatcattgatcagaagaagaattaccacccatagaacgggttttgtacagcttacccacagtggtctt |
203 |
Q |
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| T |
21079351 |
ttaccaaaaccacggatattccagtacaaaacaatcattgatcagaagaagaattaccacccgtagaacgggttttgtacggcttacccacagtggtctt |
21079252 |
T |
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| Q |
204 |
ttagaattactgtgaacctctgtcaaaaccagctaggcaaagg-nnnnnnnnctacataccaaaacccaagcaaactaaaggtttgagctaacaattgtc |
302 |
Q |
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| T |
21079251 |
ttagaattattgtgaacctctgtcaaaaccagctaggcaaaggaaaaaaaaactacataccaaaacccaagcaaactaaaggtttgagctaacaattgtc |
21079152 |
T |
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| Q |
303 |
aagttctatgattcaggtttaacacattcagaacaacgttgcaagtgatcaaac |
356 |
Q |
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| T |
21079151 |
aagttctatgatttaggtttaacacattcagaacaacgttgcaagtgatcaaac |
21079098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 17764511 - 17764437
Alignment:
| Q |
129 |
acaaaacaatcattgatcagaagaagaattaccacccatagaacgggttttgtacagcttacccacagtggtctt |
203 |
Q |
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||||||| ||| ||||||| || ||||||| ||||| ||||||||||||||||| ||||||||||| ||||||| |
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| T |
17764511 |
acaaaactgtcaatgatcagtagtagaattatcacccgtagaacgggttttgtacggcttacccacaatggtctt |
17764437 |
T |
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