View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19697_low_13 (Length: 270)
Name: NF19697_low_13
Description: NF19697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19697_low_13 |
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| [»] scaffold0259 (1 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 14829754 - 14830011
Alignment:
| Q |
9 |
cacattatttttacctttattaaaaagatcactagaacaattcatctttctttgttgatgttctcgtatttaattaaagaaattgcaatcgccggagaaa |
108 |
Q |
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| T |
14829754 |
cacattatttttacctttattaaaaagatcattagaacaattcatctttctttgttgatgttctcgtatttaattaaagaaattgcagtcgccggagaaa |
14829853 |
T |
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| Q |
109 |
atacatgatagcctttgaatcgagttatattgcacagcttgtagatctaatagaggcaaaacgatagaaaatttaattggaga-------------aatc |
195 |
Q |
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| T |
14829854 |
atacatgatagcctttgaatcgagttatattgcacagcttgtagatctaatagaggcaaaacgatagaaaatttaattggagaacaaaatataactaatc |
14829953 |
T |
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| Q |
196 |
aatgaaagaatcaaatatatgacttatatttcgctatatatacatatattgtgtaagt |
253 |
Q |
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| T |
14829954 |
aatgaaagaatcaaatatatgacttatatttcgctatatatacatatattgtgtaagt |
14830011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 19778 - 19954
Alignment:
| Q |
9 |
cacattatttttacctttattaaaaagatcactagaacaattcatctttctttgttgatgttctcgtatttaattaaagaaattgcaatcgccggagaaa |
108 |
Q |
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||||||||||||||||| ||||||| || || ||||||| ||||||||||||| ||||||||||| ||||| ||||||||||| ||| ||| | |||||| |
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| T |
19778 |
cacattatttttaccttcattaaaacgaacattagaacagttcatctttctttcttgatgttctcatatttgattaaagaaatcgcagtcgtcagagaaa |
19877 |
T |
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| Q |
109 |
atacatgatagcctttgaatcgagttatattgcacagcttgtagatctaatagaggcaaaacgatagaaaatttaat |
185 |
Q |
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| T |
19878 |
atacttgatatcctttgtatcgatttatgttgcatagcttgttgatctaatagagagaaaacaaaagaaaatttaat |
19954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 117269 - 117398
Alignment:
| Q |
64 |
tgatgttctcgtatttaattaaagaaattgcaatcgccggagaaaatacatgatagcctttgaatcgagttatattgcacagcttgtagatctaatagag |
163 |
Q |
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|||||||||| ||| ||||| ||||||| ||| ||| ||||||||| | ||||||||||||||||||| | ||||| |||||||||||||| ||||| |
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| T |
117269 |
tgatgttctcatatataattgaagaaatcacaactgccagagaaaatatttaatagcctttgaatcgagttttgttgcatagcttgtagatctagtagag |
117368 |
T |
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| Q |
164 |
gcaaaacgatagaaaatttaattggagaaa |
193 |
Q |
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| T |
117369 |
gcacaacaacagaaaatttaattggagaaa |
117398 |
T |
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