View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19697_low_14 (Length: 250)
Name: NF19697_low_14
Description: NF19697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19697_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 42614182 - 42614414
Alignment:
| Q |
1 |
tgataaaacttgcaagaagaatatatgatactggtaaagaaatctgagcannnnnnnntttgaaacaaaagtataaggcgaactatttaaaactgtcagg |
100 |
Q |
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| T |
42614182 |
tgataaaacttgcaagaagaatatatgatactggtaaagaaatctgagcaggggggg-tttgaaacaaaagtataaggcgaactatttaaaactgtccgg |
42614280 |
T |
|
| Q |
101 |
atcttaatagtttatcatctgacataaatgataatacaatattaggatgttaatctatgtacccaatctttgtttattgaaaaatacttacgtaaaatat |
200 |
Q |
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| T |
42614281 |
atcttaatagtttatcatctgacataaatgataatacaatattaggatgttaatctatgtacccaatctttgtttattgaaaaatacttacgtaaaatat |
42614380 |
T |
|
| Q |
201 |
aaatatgcatactaaatttaacatcgatataagt |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
42614381 |
aaatatgcatactaaatttaacatcgatataagt |
42614414 |
T |
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