View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19697_low_17 (Length: 220)
Name: NF19697_low_17
Description: NF19697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19697_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 39987875 - 39987672
Alignment:
| Q |
1 |
tatagccaaagcttcatcttctttaatatctaaatcacacaaattcaactctcttaaatcactgaaaatgattttgaatttaaacggcactcccataagc |
100 |
Q |
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| T |
39987875 |
tatagccaaagcttcatcttctttaatatctaaatcacacaaattcaactctcttaaatcactgaaaatgattttgaatttaaacggcactcccataagc |
39987776 |
T |
|
| Q |
101 |
ctagcaaatttttccatccttgaaccaatttccttcatgactttttgcaccgagccaccgctgactgcagtgactacagtggttaaacgaaggtgaggcg |
200 |
Q |
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| T |
39987775 |
ctagcaaatttttccatccttgaaccaatttccttcatgactttttgcaccgagccaccgctgattgcagtgactacagtggttaaacgaaggtgaggcg |
39987676 |
T |
|
| Q |
201 |
tatc |
204 |
Q |
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|||| |
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| T |
39987675 |
tatc |
39987672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 5365538 - 5365611
Alignment:
| Q |
74 |
ttgaatttaaacggcactcccataagcctagcaaatttttccatccttgaaccaatttccttcatgactttttg |
147 |
Q |
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| T |
5365538 |
ttgaatttaaatggaactcccatgagtctagcgaatttttccattctagcaccaatttccttcataactttttg |
5365611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 5365466 - 5365494
Alignment:
| Q |
8 |
aaagcttcatcttctttaatatctaaatc |
36 |
Q |
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| T |
5365466 |
aaagcttcatcttctttaatatctaaatc |
5365494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 42485651 - 42485700
Alignment:
| Q |
89 |
actcccataagcctagcaaatttttccatccttgaaccaatttccttcat |
138 |
Q |
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||||||||||||||||||||||| ||||| ||| ||||| ||||||||| |
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| T |
42485651 |
actcccataagcctagcaaatttctccattctttgaccaacttccttcat |
42485700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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