View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19697_low_3 (Length: 400)

Name: NF19697_low_3
Description: NF19697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19697_low_3
NF19697_low_3
[»] chr1 (1 HSPs)
chr1 (13-383)||(31841294-31841677)


Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 383
Target Start/End: Original strand, 31841294 - 31841677
Alignment:
Q  13 aatattactacgtgtagtaaatgatatacgatagtataaagttataaacttaattttacattggccatgttgagtgttgttcacaaaatatattaattaa 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |    
T  31841294 aatactactacgtgtagtaaatgatatacgatagtataaagttataaacttaattttacattggccatgttgagtgttgttcacaaaatatatta----a 31841389  T
Q  113 ttttggtctcttcttttgtgttgtgaatagtgtttaacatatcattcattcattaactagttattaattattctgttctggtaacagataacttatttaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31841390 ttttggtctcttcttttgtgttgtgaatagtgtttaacatatcattcattcattaactagttattaattattctgttctggtaacagataacttatttaa 31841489  T
Q  213 caagcnnnnnnntaactgcagaggtttcagtcttcagatatagtaatacgagtgatgctctaattgtgacatcataagttgcattatt------------ 300  Q
    |||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  31841490 caagcaaaaaaaaaactgcagaggtttcagtcttcagatatagtaatacgagtgatgctctaattgtgacatcataagttgcattattatacataagtaa 31841589  T
Q  301 -----atacattaattgtacacacgtgcactctcatgtacacttcattatctcattgatcttgttattttgtcatgctattgacaaag 383  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31841590 gaccgatacattaattgtacacacgtgcactctcatgtacacttcattatctcattgatcttgttattttttcatgctattgacaaag 31841677  T

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