View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19697_low_5 (Length: 348)
Name: NF19697_low_5
Description: NF19697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19697_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 1630267 - 1629944
Alignment:
| Q |
18 |
agagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630267 |
agagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtg |
1630168 |
T |
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| Q |
118 |
gttataccacttatagctctgcaacagcaggtgagttatattccatctcctttaatctctttttattttatcatttgaagttctaaatttttataataag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630167 |
gttataccacttatagctctgcaacagcaggtgagttatattccatctcctttaatctctttttattttatcatttgaagttctaaatttttataataag |
1630068 |
T |
|
| Q |
218 |
ataggtttataatatttaaattatacttgaggctttctta----catacaattactttaattttttattttaaataattactcttggatcatttaaattt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630067 |
ataggtttataatatttaaattatacttgaggctttcttacatgcatacaattactttcattttttattttaaataattactcttggatcatttaaattt |
1629968 |
T |
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| Q |
314 |
aggtattgatggacttcacttcat |
337 |
Q |
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|||||||||||||||||||||||| |
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| T |
1629967 |
aggtattgatggacttcacttcat |
1629944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 1607271 - 1607121
Alignment:
| Q |
18 |
agagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtg |
117 |
Q |
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| T |
1607271 |
agagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtg |
1607172 |
T |
|
| Q |
118 |
gttataccacttatagctctgcaacagcaggtgagttatattccatctcct |
168 |
Q |
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| T |
1607171 |
gttttaccacttatagctctgcaacagcaggtgaattatatttcatttcct |
1607121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 1624292 - 1624142
Alignment:
| Q |
18 |
agagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1624292 |
agagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtg |
1624193 |
T |
|
| Q |
118 |
gttataccacttatagctctgcaacagcaggtgagttatattccatctcct |
168 |
Q |
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||| |||||||||||||||||||||||||||||| ||||||| ||| |||| |
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| T |
1624192 |
gttttaccacttatagctctgcaacagcaggtgaattatatttcatttcct |
1624142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 10820014 - 10820160
Alignment:
| Q |
20 |
agagaacattgaggttgctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggt |
119 |
Q |
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|||||||||||||||||||||||||||||| || |||||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10820014 |
agagaacattgaggttgctgttcataatgataacattatgttggtcggtgatggaatgcaaaataccatcataacaagttctagaagtgttcaaggtggt |
10820113 |
T |
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| Q |
120 |
tataccacttatagctctgcaacagcaggtgagttatattccatctc |
166 |
Q |
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| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10820114 |
tttaccacttatagctctgcaacagccggtgagttatattccatctc |
10820160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 177 - 337
Target Start/End: Original strand, 10820598 - 10820754
Alignment:
| Q |
177 |
tttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatacttgaggctttcttacatacaattactttaattt |
276 |
Q |
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|||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| || | |
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| T |
10820598 |
tttttattttatattttgaagttctaaaattttatactaagataggtttataatatttaaattataattgtggctttcttacctacaattactttcatat |
10820697 |
T |
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| Q |
277 |
tttattttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
337 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10820698 |
----ttttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
10820754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 294 - 337
Target Start/End: Complemental strand, 1606689 - 1606646
Alignment:
| Q |
294 |
ctcttggatcatttaaatttaggtattgatggacttcacttcat |
337 |
Q |
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| T |
1606689 |
ctcttggatcatttaaatttaggtattgatggacttcacttcat |
1606646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 18785316 - 18785179
Alignment:
| Q |
20 |
agagaacattgaggttgctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggt |
119 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| || |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18785316 |
agagaacattgaggttgcggttcacaatgataacattatgttggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggt |
18785217 |
T |
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| Q |
120 |
tataccacttatagctctgcaacagcaggtgagttata |
157 |
Q |
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| T |
18785216 |
tttaccacttatagctctgcaacagcaggtgaattata |
18785179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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