View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19697_low_6 (Length: 344)
Name: NF19697_low_6
Description: NF19697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19697_low_6 |
 | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 24104652 - 24104325
Alignment:
| Q |
1 |
aagccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacct |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
24104652 |
aagccgcatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcaccttagaggctttcacataacct |
24104553 |
T |
|
| Q |
101 |
ttgtgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatgg |
200 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24104552 |
tcgtgaacaccgaatacaatcacaaacgcttgctcgaatcaagagatcctaattctcttgatggtttcaatgactttaactttgagaccataccagatgg |
24104453 |
T |
|
| Q |
201 |
tctaactccaatggaaggcaatggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcagcccttcgatgaacttctt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24104452 |
tctaactccaatggaaggcaatggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcagccctttgatgaacttctt |
24104353 |
T |
|
| Q |
301 |
actagacttcatcaatctgccaatgatg |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
24104352 |
actagacttcatcaatctgccaatgatg |
24104325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 28)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 4265628 - 4265955
Alignment:
| Q |
1 |
aagccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
4265628 |
aagccacatgctgtgttgattccagctccatttcaaggccatatcaatgcattgttcaatctaggaaagcttcttcaccttagaggctttcacataacct |
4265727 |
T |
|
| Q |
101 |
ttgtgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatgg |
200 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||||||| ||||||||| ||| |||||| |||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
4265728 |
ttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaattctcttgatggtttcagtgactttaagtttgagaccataccagatgg |
4265827 |
T |
|
| Q |
201 |
tctaactccaatggaaggcaatggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcagcccttcgatgaacttctt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
4265828 |
tctaactccaatggaaggcaatggtgatgctactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcaaccctttgatgaacttctt |
4265927 |
T |
|
| Q |
301 |
actagacttcatcaatctgccaatgatg |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
4265928 |
actagacttcatcaatctgccaatgatg |
4265955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 4623864 - 4623622
Alignment:
| Q |
1 |
aagccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacct |
100 |
Q |
| |
|
||||||||||||||||||||| || |||| ||||||||||||||||| ||||||||||||||| |||||||||| | ||||||||||||||||||||| |
|
|
| T |
4623864 |
aagccacatgctgtgttgattgcatatccagttcaaggtcatatcaatccattgttcaaactagcaaagcttctttaccttaaaggctttcacataacct |
4623765 |
T |
|
| Q |
101 |
ttgtgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatgg |
200 |
Q |
| |
|
||| |||||||||||||||| |||||||||||| ||||||||| ||| || | ||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
4623764 |
ttggtcacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcctttgatggtttcacggactttaactttgagaccattccagatgg |
4623665 |
T |
|
| Q |
201 |
tctaactccaatggaaggcaatggtgatgttactcaagacata |
243 |
Q |
| |
|
| |||| ||||||||||| |||||||||||| |||||||||| |
|
|
| T |
4623664 |
tttaacaccaatggaaggtgatggtgatgttagtcaagacata |
4623622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 4618855 - 4618620
Alignment:
| Q |
4 |
ccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacctttg |
103 |
Q |
| |
|
||||||| |||| |||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
4618855 |
ccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacctttg |
4618756 |
T |
|
| Q |
104 |
tgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtct |
203 |
Q |
| |
|
| ||||||||||||||||| |||||||||||| ||||||||| ||| || ||||||||||||||| |||||||||||||||| ||| ||||||||| | |
|
|
| T |
4618755 |
ttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcttttgatggtttcacggactttaactttgagagcattccagatggttt |
4618656 |
T |
|
| Q |
204 |
aactccaatggaaggcaatggtgatgttactcaaga |
239 |
Q |
| |
|
||| ||||||||||| |||||||||||| |||||| |
|
|
| T |
4618655 |
aacaccaatggaaggtgatggtgatgttagtcaaga |
4618620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 4471471 - 4471166
Alignment:
| Q |
1 |
aagccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacct |
100 |
Q |
| |
|
|||||||||||||| ||||||||| |||| |||||| ||||||||||||||||| ||||||| |||||||||||| ||| ||||||||||||||| | |
|
|
| T |
4471471 |
aagccacatgctgtattgattccatgtccagctcaaggccatatcaatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgt |
4471372 |
T |
|
| Q |
101 |
ttgtgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatgg |
200 |
Q |
| |
|
|||| ||||| ||||||||||| ||| ||||||| | ||||||| |||| ||||| |||||||||||| ||||||||||||||||||||| ||| |||| |
|
|
| T |
4471371 |
ttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcctgattctcttgatggtttcactgactttaactttgagaccattccaaatgg |
4471272 |
T |
|
| Q |
201 |
tctaactccaatggaaggcaatggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcagcccttcgatgaacttctt |
300 |
Q |
| |
|
| | ||| |||||||| | ||||||| ||| |||||||||| || | || | | ||||||||||||| |||||||||| ||||| | |||||||||| |
|
|
| T |
4471271 |
ttttactgcaatggaa---agtggtgatcttattcaagacatacactccttttttcgatcaatcatgacggacttccttcaaccctttggtgaacttctt |
4471175 |
T |
|
| Q |
301 |
actagactt |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
4471174 |
actagactt |
4471166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 4 - 243
Target Start/End: Complemental strand, 4594564 - 4594325
Alignment:
| Q |
4 |
ccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacctttg |
103 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||| ||| ||||||||||||| | ||| |||||||| ||| ||| |||||||||||||||| |
|
|
| T |
4594564 |
ccacatgctgtgttgattccagctccacttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcacataacctttg |
4594465 |
T |
|
| Q |
104 |
tgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtct |
203 |
Q |
| |
|
| ||||| ||||||||||| ||||| |||||| ||||||||| ||| ||| | || ||||||||| || |||| |||||| ||||||||||||||||| |
|
|
| T |
4594464 |
tcaacactgaatacaatcataaacgtttgctcaaatcaagaggtccaaatgccttagatggtttccctggttttagctttgaaaccataccagatggtct |
4594365 |
T |
|
| Q |
204 |
aactccaatggaaggcaatggtgatgttactcaagacata |
243 |
Q |
| |
|
||| ||||||||||| |||||||||||| |||||||||| |
|
|
| T |
4594364 |
aacaccaatggaaggtgatggtgatgttagtcaagacata |
4594325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 3173557 - 3173321
Alignment:
| Q |
4 |
ccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacctttg |
103 |
Q |
| |
|
|||||||| ||||| | |||| |||| ||||||| ||||||||||||||||| ||||||| ||| || ||||| |||| |||||||||||||||||||| |
|
|
| T |
3173557 |
ccacatgcagtgttaactccatatccagttcaaggccatatcaatgcattgttgaaactagcaaaactacttcactttagaggctttcacataacctttg |
3173458 |
T |
|
| Q |
104 |
tgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtct |
203 |
Q |
| |
|
| ||||| ||||||||||| ||||| |||||| |||||| | ||| ||| | ||||||||||||||||| |||||||||||||| |||||||||||| | |
|
|
| T |
3173457 |
taaacactgaatacaatcacaaacggttgctcaaatcaaagggtccaaatgcctttgatggtttcaatgattttaactttgagactataccagatggttt |
3173358 |
T |
|
| Q |
204 |
aactccaatggaaggcaatggtgatgttactcaagac |
240 |
Q |
| |
|
|||| |||||||||| |||||||||||| ||||||| |
|
|
| T |
3173357 |
aacttcaatggaaggtgatggtgatgttagtcaagac |
3173321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 4 - 232
Target Start/End: Complemental strand, 4507465 - 4507237
Alignment:
| Q |
4 |
ccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacctttg |
103 |
Q |
| |
|
||||||||||||||||||||| |||| |||||| ||||||||| ||||||||||||||| ||||||||||| || |||||||||||||||||||| |
|
|
| T |
4507465 |
ccacatgctgtgttgattccatatccaactcaaggccatatcaatccattgttcaaactagctaagcttcttcaccttcgaggctttcacataacctttg |
4507366 |
T |
|
| Q |
104 |
tgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtct |
203 |
Q |
| |
|
| ||||||||||||||||| |||||||||||| ||||||||| | ||| | ||||||||||||| ||| |||||||||||||| ||||||||||| | |
|
|
| T |
4507365 |
ttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaatgcctttgatggtttcactgattttaactttgagactctaccagatggttt |
4507266 |
T |
|
| Q |
204 |
aactccaatggaaggcaatggtgatgtta |
232 |
Q |
| |
|
|||||||||||| || |||||||||||| |
|
|
| T |
4507265 |
aactccaatggatggtgatggtgatgtta |
4507237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 4627707 - 4627396
Alignment:
| Q |
1 |
aagccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacct |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||| | ||||| ||| | ||||| ||| ||||||||||||||||| |
|
|
| T |
4627707 |
aagccacatgctgtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaattacttcaccttagaggctttcacataacct |
4627608 |
T |
|
| Q |
101 |
ttgtgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatgg |
200 |
Q |
| |
|
|||| ||||| ||||||||||| ||||| |||||| ||||||||| | ||| | |||||||||||| |||| |||| ||||||||||||||||||||| |
|
|
| T |
4627607 |
ttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatgg |
4627508 |
T |
|
| Q |
201 |
tctaactccaatggaaggcaatggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcagcccttcgatgaacttctt |
300 |
Q |
| |
|
| |||| ||| | ||||| |||| |||||||||||||||||| ||||| |||||||| | | |||||||||||||||||| | |||||||||| |
|
|
| T |
4627507 |
tttaacaccactagaaggtgatggcgatgttactcaagacataccatctctttcccaatcaataagaaagaacttccttcagccctttggtgaacttctt |
4627408 |
T |
|
| Q |
301 |
actagacttcat |
312 |
Q |
| |
|
||| ||||||| |
|
|
| T |
4627407 |
gctaaacttcat |
4627396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 4576012 - 4575738
Alignment:
| Q |
1 |
aagccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacct |
100 |
Q |
| |
|
||||||||||| ||||| | |||| |||| ||||||| ||||||||||||||||| ||| ||| ||| || ||||| ||| ||||||||||||||||| |
|
|
| T |
4576012 |
aagccacatgcagtgttaactccatttccagttcaaggccatatcaatgcattgttgaaaatagcaaaactgcttcaccttagaggctttcacataacct |
4575913 |
T |
|
| Q |
101 |
ttgtgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatgg |
200 |
Q |
| |
|
|||| ||||| ||||||||||| ||||| |||||| ||||||||| | ||| | ||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
4575912 |
ttgttaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcactgactttaactttgagactataccagatgg |
4575813 |
T |
|
| Q |
201 |
tctaactccaatggaaggcaatggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacgaactt |
275 |
Q |
| |
|
| ||||||||| ||| || ||||||||||| | ||||||| || || |||||| |||||||||| |||||||| |
|
|
| T |
4575812 |
tttaactccaaaggatggtaatggtgatgtaagtcaagacctacactctcttggtgaatcaatcataacgaactt |
4575738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 4258747 - 4259057
Alignment:
| Q |
1 |
aagccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacct |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||| ||||||||| ||||||||||||||| ||||||||||| |||||||| ||||||||||||| |
|
|
| T |
4258747 |
aagccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagctaagcttcttcactttaaaggttttcacataacct |
4258846 |
T |
|
| Q |
101 |
ttgtgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatgg |
200 |
Q |
| |
|
|||| ||||| ||||| ||||| ||||| |||||| ||||||||| | ||| | |||||||||||| ||| |||| ||||||||| || | |||||| |
|
|
| T |
4258847 |
ttgtcaacactgaatataatcacaaacgtttgctcaaatcaagaggtgaaaatgccgttgatggtttcattgattttacctttgagactattcaagatgg |
4258946 |
T |
|
| Q |
201 |
tctaactccaatggaaggcaatggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcagcccttcgatgaacttctt |
300 |
Q |
| |
|
||| |||||| ||||||| |||| ||||||||||||||| || | | ||| ||||| || | | |||||||||||||||||| | |||||||||| |
|
|
| T |
4258947 |
tctgactccagtggaaggtgatggcgatgttactcaagacgtaccctccctttctcaatctataagaaagaacttccttcagccctttggtgaacttctt |
4259046 |
T |
|
| Q |
301 |
actagacttca |
311 |
Q |
| |
|
||| |||||| |
|
|
| T |
4259047 |
gctaaacttca |
4259057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 4462764 - 4462459
Alignment:
| Q |
1 |
aagccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacct |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||| || ||||| ||| ||| ||||||||||||| |
|
|
| T |
4462764 |
aagccacatgctgtgttgattccatgtccatcccaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggttttcacataacct |
4462665 |
T |
|
| Q |
101 |
ttgtgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatgg |
200 |
Q |
| |
|
|||| ||||| ||||||||||| || |||||||| | ||||||| |||||||||| | |||||||||| ||||||||||||||||||||| ||| |||| |
|
|
| T |
4462664 |
ttgtcaacactgaatacaatcacaattgcttgctcaattcaagaggtcctaattctctagatggtttcactgactttaactttgagaccattccaaatgg |
4462565 |
T |
|
| Q |
201 |
tctaactccaatggaaggcaatggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcagcccttcgatgaacttctt |
300 |
Q |
| |
|
| | || |||||||| | |||||||||| ||||||| || || || | ||||||||||||| ||||||| |||| ||||| |||||||||| |
|
|
| T |
4462564 |
ttttacaacaatggaa---actggtgatgtttttcaagacgtacacttattttttcaatcaatcatgatgaacttcattcaaccctttagtgaacttctt |
4462468 |
T |
|
| Q |
301 |
actagactt |
309 |
Q |
| |
|
|| |||||| |
|
|
| T |
4462467 |
acaagactt |
4462459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 4581571 - 4581250
Alignment:
| Q |
1 |
aagccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacct |
100 |
Q |
| |
|
||||||||||| |||||||||||| |||| ||||||| ||||||| | |||| | | ||||| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
4581571 |
aagccacatgcagtgttgattccatatccacttcaaggacatatcactccattaataacactagcaaagcttcttcaccttagaggctttcacataacct |
4581472 |
T |
|
| Q |
101 |
ttgtgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatgg |
200 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||| ||||||||| ||| || | ||||||||||||| || |||| ||||||||| || |||||||| |
|
|
| T |
4581471 |
ttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcgtttgatggtttcaccgattttacctttgagactattccagatgg |
4581372 |
T |
|
| Q |
201 |
tctaactccaatggaaggcaatggtgatgttactcaagacatataccctct-tgtgcaatcaatcatgacgaacttccttcagcccttcgatgaacttct |
299 |
Q |
| |
|
| ||||||| || |||||| || ||||||||| |||||||||||| |||| |||| ||||||||| | ||||||||| || || || ||||||||| |
|
|
| T |
4581371 |
tttaactccgatagaaggcgatagtgatgttaatcaagacatatatgctctatgtg-aatcaatcagaaagaacttcctacaacctttttgtgaacttct |
4581273 |
T |
|
| Q |
300 |
tactagacttcatcaatctgcca |
322 |
Q |
| |
|
| |||||||| || | ||||||| |
|
|
| T |
4581272 |
tgctagacttaatgactctgcca |
4581250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 4517897 - 4517656
Alignment:
| Q |
1 |
aagccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacct |
100 |
Q |
| |
|
||||||||||| ||| | | |||| |||| ||||||| ||||||||| | ||||| ||||||| ||| ||||||||| ||| ||||||||||||||||| |
|
|
| T |
4517897 |
aagccacatgcagtgataactccatatccacttcaaggccatatcaatccgttgttaaaactagcaaaacttcttcatcttagaggctttcacataacct |
4517798 |
T |
|
| Q |
101 |
ttgtgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatgg |
200 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |||||| ||||||||| ||| || | ||||||||||||| ||| |||| ||||||||| || |||||||| |
|
|
| T |
4517797 |
ttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttgagactattccagatgg |
4517698 |
T |
|
| Q |
201 |
tctaactccaatggaaggcaatggtgatgttactcaagacat |
242 |
Q |
| |
|
| ||||||| || |||||| |||||||||||| ||||||||| |
|
|
| T |
4517697 |
tttaactccgatagaaggcgatggtgatgttagtcaagacat |
4517656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 4513553 - 4513775
Alignment:
| Q |
4 |
ccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacctttg |
103 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||| ||||||||| || |||||| | ||| ||| || ||||| ||| |||||||||||||||||||| |
|
|
| T |
4513553 |
ccacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttcagattagcaaaactacttcaccttagaggctttcacataacctttg |
4513652 |
T |
|
| Q |
104 |
tgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtct |
203 |
Q |
| |
|
| ||||||||||||||||| ||||| |||||| ||||||||| ||||||| ||||||||||||||| || ||| ||||||||| || || |||||| | |
|
|
| T |
4513653 |
ttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggttt |
4513752 |
T |
|
| Q |
204 |
aactccaatggaaggcaatggtg |
226 |
Q |
| |
|
|||||||||||| ||| |||||| |
|
|
| T |
4513753 |
aactccaatggatggcgatggtg |
4513775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 4 - 275
Target Start/End: Complemental strand, 4482419 - 4482148
Alignment:
| Q |
4 |
ccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacctttg |
103 |
Q |
| |
|
|||||||| ||||||| |||| |||| |||||| ||||||||||||||||| ||| ||||||| || ||||| ||| |||||||||||||||||||| |
|
|
| T |
4482419 |
ccacatgcagtgttgactccatttccagctcaaggccatatcaatgcattgttgaaaataggaaaactacttcaccttagaggctttcacataacctttg |
4482320 |
T |
|
| Q |
104 |
tgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtct |
203 |
Q |
| |
|
| ||||||||||||||||| ||||| ||||| ||||||| | ||| || | ||||||||||||| ||| |||| |||||| || |||||||||||| | |
|
|
| T |
4482319 |
tcaacaccgaatacaatcacaaacgtttgctaaaatcaaggggtccaaaagcctttgatggtttcactgattttacctttgaaacgataccagatggttt |
4482220 |
T |
|
| Q |
204 |
aactccaatggaaggcaatggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacgaactt |
275 |
Q |
| |
|
||||||||| ||||| ||| ||| || | ||||||| ||| | ||||| |||||||||||||||||||| |
|
|
| T |
4482219 |
aactccaattgaaggtgatgatgaagtaagtcaagacttattctctcttactcaatcaatcatgacgaactt |
4482148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 88 - 240
Target Start/End: Original strand, 4502951 - 4503103
Alignment:
| Q |
88 |
tttcacataacctttgtgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgaga |
187 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| ||| ||| | ||||||||||||||||| |||| |||||||| |
|
|
| T |
4502951 |
tttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgaga |
4503050 |
T |
|
| Q |
188 |
ccataccagatggtctaactccaatggaaggcaatggtgatgttactcaagac |
240 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
4503051 |
ccataccagatggtttaactccggtggaaggtgatggtgatgttagtcaagac |
4503103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 4565583 - 4565348
Alignment:
| Q |
4 |
ccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacctttg |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| | ||| |||||||| ||| ||| ||||| |||||||||| |
|
|
| T |
4565583 |
ccacatgctgtgttgattccagctccatttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcatataacctttg |
4565484 |
T |
|
| Q |
104 |
tgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtct |
203 |
Q |
| |
|
| ||||| ||||||||||| ||||| ||||| ||||||||| ||| ||| | || ||||||| | || ||| |||||| ||||||||||||||||| |
|
|
| T |
4565483 |
tcaacactgaatacaatcataaacgattgctaaaatcaagaggtccaaatgccttagatggttcccgtggtttttgctttgaaaccataccagatggtct |
4565384 |
T |
|
| Q |
204 |
aactccaatggaaggcaatggtgatgttactcaaga |
239 |
Q |
| |
|
||| || || ||||| |||||||||||| |||||| |
|
|
| T |
4565383 |
aacaccgatagaaggtgatggtgatgttagtcaaga |
4565348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 4488768 - 4488978
Alignment:
| Q |
1 |
aagccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacct |
100 |
Q |
| |
|
||||||||||| ||||| | ||| |||| ||||||| ||||||||||||||||| ||||||||||| || ||||| ||| ||| ||||||||||||| |
|
|
| T |
4488768 |
aagccacatgcagtgttaacaccatttccagttcaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggatttcacataacct |
4488867 |
T |
|
| Q |
101 |
ttgtgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatgg |
200 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||||||| ||||||||| ||| ||| | ||||||||||| | ||| |||| ||||||||| || |||||||| |
|
|
| T |
4488868 |
ttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttaactgattttagctttgagactattccagatgg |
4488967 |
T |
|
| Q |
201 |
tctaactccaa |
211 |
Q |
| |
|
| ||||||||| |
|
|
| T |
4488968 |
tttaactccaa |
4488978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 4612292 - 4612517
Alignment:
| Q |
4 |
ccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacctttg |
103 |
Q |
| |
|
|||||||| ||||| |||||| |||| ||||||| ||||||||| |||| ||||||||| ||| |||||||| ||| ||||||||||||||| || | |
|
|
| T |
4612292 |
ccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataacattcg |
4612391 |
T |
|
| Q |
104 |
tgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtct |
203 |
Q |
| |
|
| ||||||||||||||||| |||||||||||| ||||||||| ||| ||| | |||| |||||||| ||| |||| ||||||| | |||||||||||||| |
|
|
| T |
4612392 |
tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggtttcactgattttacctttgaggctataccagatggtct |
4612491 |
T |
|
| Q |
204 |
aactccaatggaaggcaatggtgatg |
229 |
Q |
| |
|
| || ||| |||||| ||||||||| |
|
|
| T |
4612492 |
accttcaaacgaaggcgatggtgatg |
4612517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 4 - 252
Target Start/End: Complemental strand, 4558679 - 4558431
Alignment:
| Q |
4 |
ccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacctttg |
103 |
Q |
| |
|
|||||||||||||| |||||| |||| ||||||| ||||||||| ||||||| ||||||| ||| |||||||| ||| ||| ||||||||||||| || |
|
|
| T |
4558679 |
ccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggatttcacataacctatg |
4558580 |
T |
|
| Q |
104 |
tgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtct |
203 |
Q |
| |
|
| ||||| |||||||| || ||||| |||||| | ||||||| ||| ||| | ||||||||||||| ||| |||| ||||||||| || || |||||| | |
|
|
| T |
4558579 |
taaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttagctttgagactattccggatggttt |
4558480 |
T |
|
| Q |
204 |
aactccaatggaaggcaatggtgatgttactcaagacatataccctctt |
252 |
Q |
| |
|
|||||||| ||| || |||| ||||||| ||||||||| ||| ||||| |
|
|
| T |
4558479 |
aactccaacggatggtgatggcgatgttagtcaagacatttacgctctt |
4558431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 27 - 275
Target Start/End: Complemental strand, 4562193 - 4561945
Alignment:
| Q |
27 |
tccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataa-cctttgtgaacaccgaatacaatcagaa |
125 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||| ||| ||| || ||||| | | |||||||||||||| ||||||| ||||| ||||||||||| || |
|
|
| T |
4562193 |
tccagttcaaggtcatatcaatgcattgttgaaaatagcaaaactgcttcacctaagaggctttcacataaacctttgttaacactgaatacaatcacaa |
4562094 |
T |
|
| Q |
126 |
acgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaactccaatggaaggcaatggt |
225 |
Q |
| |
|
||| ||||| ||||||||| | ||| | ||||||||||||| |||||||||||||||||| |||||||||||| ||||||||| ||| || ||||| |
|
|
| T |
4562093 |
acgtttgcta-aatcaagaggtgaaaatgcctttgatggtttcactgactttaactttgagactataccagatggtttaactccaaaggatggtgatggt |
4561995 |
T |
|
| Q |
226 |
gatgttactcaagacatataccctcttgtgcaatcaatcatgacgaactt |
275 |
Q |
| |
|
||| ||| ||||||| || || |||||| |||||||||| |||||||| |
|
|
| T |
4561994 |
gatattagtcaagacctacactctcttggtgaatcaatcataacgaactt |
4561945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 4587183 - 4586881
Alignment:
| Q |
7 |
catgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacctttgtga |
106 |
Q |
| |
|
||||||||||| || ||| ||||| ||||||| ||||||||| ||||||| ||||||| || |||||||| || ||| ||||||||||||||||| | |
|
|
| T |
4587183 |
catgctgtgttaatcccatctccagttcaaggccatatcaatccattgttgaaactagctaaacttcttcaccttcgaggatttcacataacctttgtaa |
4587084 |
T |
|
| Q |
107 |
acaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaac |
206 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| | ||||||| ||| ||| | ||||||| ||| | ||| |||| ||||||||| || ||||||||| |||| |
|
|
| T |
4587083 |
acactgaatacaatcacaaacggttgcttaagtcaagagctccaaatgcctttgatgatttaactgattttagctttgagactattccagatggtttaac |
4586984 |
T |
|
| Q |
207 |
tccaatggaaggcaatggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcagcccttcgatgaacttcttactaga |
306 |
Q |
| |
|
||||| ||| || |||||||||||| ||||||||| ||| ||||| ||||||||| | ||||||||| || || ||| ||||||||| ||||| |
|
|
| T |
4586983 |
tccaacggatggtgatggtgatgttagtcaagacatttacgctctttgtaaatcaatcagaaagaacttcctacaacctttccgcgaacttcttgctaga |
4586884 |
T |
|
| Q |
307 |
ctt |
309 |
Q |
| |
|
||| |
|
|
| T |
4586883 |
ctt |
4586881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 4603662 - 4603429
Alignment:
| Q |
6 |
acatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacctttgtg |
105 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| ||||||||| || |||| ||||||| ||| || |||| ||| ||| ||||||||||||||||| |
|
|
| T |
4603662 |
acatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtc |
4603563 |
T |
|
| Q |
106 |
aacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaa |
205 |
Q |
| |
|
||||||||||||||||| ||||| |||||| ||||||||| ||||||| | || || || |||| ||| |||| |||||| || || |||||||| |||| |
|
|
| T |
4603562 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagacggcttcactgattttagctttgaaacaatcccagatggactaa |
4603463 |
T |
|
| Q |
206 |
ctccaatggaaggcaatggtgatgttactcaaga |
239 |
Q |
| |
|
| || |||||||| ||| | |||||| |||||| |
|
|
| T |
4603462 |
caccgatggaaggtgatgataatgttagtcaaga |
4603429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 6 - 243
Target Start/End: Complemental strand, 4599715 - 4599478
Alignment:
| Q |
6 |
acatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacctttgtg |
105 |
Q |
| |
|
|||||| || ||||||||| ||| ||||||| |||||||| ||| ||||||||| |||| ||||||| ||| ||| ||| |||||||||| ||| |
|
|
| T |
4599715 |
acatgcagtattgattccattaccaattcaaggaaatatcaatctattaatcaaactagcaaagattcttcaccttagaggattttacataaccttcgtg |
4599616 |
T |
|
| Q |
106 |
aacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaa |
205 |
Q |
| |
|
|||||||| |||||||| |||||||||||| ||||||||| |||||||||| | ||||||||| ||| ||| ||| ||||| || ||||||||| ||| |
|
|
| T |
4599615 |
aacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctcgtaatggtttcactgatttttccttcgagactattccagatggtttaa |
4599516 |
T |
|
| Q |
206 |
ctccaatggaaggcaatggtgatgttactcaagacata |
243 |
Q |
| |
|
||||||| || || ||||||||||||| || |||||| |
|
|
| T |
4599515 |
ctccaatagatggtgatggtgatgttacacaggacata |
4599478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 106 - 310
Target Start/End: Original strand, 4298174 - 4298378
Alignment:
| Q |
106 |
aacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaa |
205 |
Q |
| |
|
||||||||||||||||| |||| | ||||||||||||| | ||| || ||||||||||||||| |||||| ||||||||| || ||||||||||| | |
|
|
| T |
4298174 |
aacaccgaatacaatcacaaacacctgctcgaatcaaggggtccaaaagcttttgatggtttcaccaactttagctttgagactattccagatggtctga |
4298273 |
T |
|
| Q |
206 |
ctccaatggaaggcaatggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcagcccttcgatgaacttcttactag |
305 |
Q |
| |
|
|||||| |||||| |||| |||||||||||||||||| ||||| |||||||||| | |||||||||||||||||| | |||||||||| ||| |
|
|
| T |
4298274 |
ctccaacggaaggtgatggagatgttactcaagacataccatctctttcccaatcaatcagaaagaacttccttcagccctttggtgaacttcttgctaa |
4298373 |
T |
|
| Q |
306 |
acttc |
310 |
Q |
| |
|
||||| |
|
|
| T |
4298374 |
acttc |
4298378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 4 - 252
Target Start/End: Complemental strand, 4572520 - 4572272
Alignment:
| Q |
4 |
ccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacctttg |
103 |
Q |
| |
|
|||||||||||||| || ||| |||| ||||||| ||||||||| ||||||| |||||| ||| ||||||| ||| ||| ||||||||||||| || |
|
|
| T |
4572520 |
ccacatgctgtgttaatcccatatccagttcaaggccatatcaatccattgttgcaactagcaaaatttcttcaccttagaggttttcacataacctatg |
4572421 |
T |
|
| Q |
104 |
tgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtct |
203 |
Q |
| |
|
| ||||| ||||||||||| ||||| |||||| | ||||||| || ||| | ||||||||||||| | ||||||||||||| || ||||||||| | |
|
|
| T |
4572420 |
taaacactgaatacaatcacaaacggttgctcaagtcaagaggtcaaaatgcctttgatggtttcaccaattttaactttgagagtattccagatggttt |
4572321 |
T |
|
| Q |
204 |
aactccaatggaaggcaatggtgatgttactcaagacatataccctctt |
252 |
Q |
| |
|
| |||||| ||| ||| |||| ||||||| ||||||||| ||| ||||| |
|
|
| T |
4572320 |
atctccaacggatggcgatggcgatgttagtcaagacatttacgctctt |
4572272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 27 - 239
Target Start/End: Complemental strand, 4569601 - 4569393
Alignment:
| Q |
27 |
tccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacctttgtgaacaccgaatacaatcagaaa |
126 |
Q |
| |
|
|||| ||||||| ||||||||| |||| || ||||||| ||| |||||||| ||| ||||||||||||||||||||| |||||||| ||||| ||| |
|
|
| T |
4569601 |
tccacttcaaggccatatcaatccattattgaaactagcaaaacttcttcaccttagaggctttcacataacctttgtcaacaccga----aatcacaaa |
4569506 |
T |
|
| Q |
127 |
cgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaactccaatggaaggcaatggtg |
226 |
Q |
| |
|
| |||||| ||||||||| ||| || | ||||||||||||| ||| |||| ||||||||| || ||||||||| ||||||| | ||||| |||||| |
|
|
| T |
4569505 |
catttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttgagactattccagatggtttaactccgacagaaggttatggtg |
4569406 |
T |
|
| Q |
227 |
atgttactcaaga |
239 |
Q |
| |
|
|| ||| |||||| |
|
|
| T |
4569405 |
atattagtcaaga |
4569393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 3 - 166
Target Start/End: Original strand, 4255394 - 4255545
Alignment:
| Q |
3 |
gccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataaccttt |
102 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| ||||||||| ||| |||||||||| ||| | |||||| ||||||| |||| |
|
|
| T |
4255394 |
gccacatgctgtgttgattccatatccagttcaaggccatatcaatctattattcaaactagcaaaattacttcatcttaaagg------------cttt |
4255481 |
T |
|
| Q |
103 |
gtgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtt |
166 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||| ||| || | |||||||||| |
|
|
| T |
4255482 |
gtcaacaccgaatacaatcacaaacgcttgctcgaatcaagaggtccaaaagcctttgatggtt |
4255545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 3088302 - 3088063
Alignment:
| Q |
1 |
aagccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacct |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||| ||| ||||||| ||||||| ||| |||||||| ||||||||||||||||||||| |
|
|
| T |
3088302 |
aagccacatgctgtgttgattccatatccacttcaaggtcatataaatccattgttaaaactagcaaaacttcttcaccttaaaggctttcacataacct |
3088203 |
T |
|
| Q |
101 |
ttgtgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatgg |
200 |
Q |
| |
|
|||| || |||||||||||||| || || ||||| ||||||||| | |||||||| |||||||||||| ||| ||| ||||||||| || | |||||| |
|
|
| T |
3088202 |
ttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtctttgagactatccaagatgg |
3088103 |
T |
|
| Q |
201 |
tctaactccaatggaaggcaatggtgatgttactcaagac |
240 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
3088102 |
tctaactccaatggaaggtaatggtgatgttagtcaagac |
3088063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 217
Target Start/End: Complemental strand, 2378 - 2165
Alignment:
| Q |
4 |
ccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacctttg |
103 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||| ||||||||| |||| |||||||||| |||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
2378 |
ccacatgctgtgttgattccatatccagttcaaggccatatcaatccattattcaaactagcaaagcttcttcaccttagaggctttcacataacctttg |
2279 |
T |
|
| Q |
104 |
tgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtct |
203 |
Q |
| |
|
| ||||| ||||||||||| |||||||||||| ||||||||| ||||||| || ||||||||||| ||| ||| ||| ||||| || || |||||| | |
|
|
| T |
2278 |
tcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttttgcttcgagactattcccgatggttt |
2179 |
T |
|
| Q |
204 |
aactccaatggaag |
217 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
2178 |
aactccagtggaag |
2165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 2025 - 2238
Alignment:
| Q |
4 |
ccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacctttg |
103 |
Q |
| |
|
||||||| |||| |||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
2025 |
ccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacctttg |
2124 |
T |
|
| Q |
104 |
tgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtct |
203 |
Q |
| |
|
| ||||| ||||||||||| |||||||||||| ||||||||| ||||||| || ||||||||||| ||| ||| ||| ||||| || || |||||| | |
|
|
| T |
2125 |
tcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttttgcttcgagactattcccgatggttt |
2224 |
T |
|
| Q |
204 |
aactccaatggaag |
217 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
2225 |
aactccagtggaag |
2238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 1282987 - 1282754
Alignment:
| Q |
4 |
ccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacctttg |
103 |
Q |
| |
|
||||||||||||||||||||| |||| |||||| ||||||||| ||||||||||||||| ||| || ||||| ||| ||||||| |||||||||||| |
|
|
| T |
1282987 |
ccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg |
1282888 |
T |
|
| Q |
104 |
tgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtct |
203 |
Q |
| |
|
| || || ||||||||||| |||||||||||| ||||||||| ||| ||| | | |||||||||| ||| |||| |||||| ||||| ||||||||||| |
|
|
| T |
1282887 |
ttaatactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgccctagatggtttcactgattttagctttgaaaccatcccagatggtct |
1282788 |
T |
|
| Q |
204 |
aactccaatggaaggcaatggtgatgttactcaa |
237 |
Q |
| |
|
||| || | ||||| |||||||||||| |||| |
|
|
| T |
1282787 |
aacatcactagaaggtgatggtgatgttagtcaa |
1282754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 1311 - 1079
Alignment:
| Q |
5 |
cacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacctttgt |
104 |
Q |
| |
|
||||||||||||| |||||| |||| |||||| ||||||||| ||||||||||||||| ||| ||| |||| ||| ||||| ||| |||||| ||| |
|
|
| T |
1311 |
cacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacctatgt |
1212 |
T |
|
| Q |
105 |
gaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtcta |
204 |
Q |
| |
|
||||| ||||||||||| ||||| |||||| ||||||||| ||| | | | || |||||||||| ||| |||| |||||| ||||| |||||||||||| |
|
|
| T |
1211 |
caacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttgaaaccatcccagatggtcta |
1112 |
T |
|
| Q |
205 |
actccaatggaaggcaatggtgatgttactcaa |
237 |
Q |
| |
|
|| ||| | ||||| |||||||||||| |||| |
|
|
| T |
1111 |
acaccactagaaggtgatggtgatgttagtcaa |
1079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 1676074 - 1675842
Alignment:
| Q |
5 |
cacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacctttgt |
104 |
Q |
| |
|
||||||||||||| |||||| |||| |||||| ||||||||| ||||||||||||||| ||| ||| |||| ||| ||||| ||| |||||| ||| |
|
|
| T |
1676074 |
cacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacctatgt |
1675975 |
T |
|
| Q |
105 |
gaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtcta |
204 |
Q |
| |
|
||||| ||||||||||| ||||| |||||| ||||||||| ||| | | | || |||||||||| ||| |||| |||||| ||||| |||||||||||| |
|
|
| T |
1675974 |
caacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttgaaaccatcccagatggtcta |
1675875 |
T |
|
| Q |
205 |
actccaatggaaggcaatggtgatgttactcaa |
237 |
Q |
| |
|
|| ||| | ||||| |||||||||||| |||| |
|
|
| T |
1675874 |
acaccactagaaggtgatggtgatgttagtcaa |
1675842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 20862384 - 20862581
Alignment:
| Q |
4 |
ccacatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcattttaaaggctttcacataacctttg |
103 |
Q |
| |
|
|||||||| ||||| | |||| |||| ||||||||||||||||| || |||| ||||||| ||| || ||||| ||| ||||||| ||||||| |||| |
|
|
| T |
20862384 |
ccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataacatttg |
20862483 |
T |
|
| Q |
104 |
tgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggt |
201 |
Q |
| |
|
| || || ||||||||||| ||||||||||| | |||| | ||| | | ||||||||||||| ||||||| |||||||||| | ||||||||| |
|
|
| T |
20862484 |
tcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcgctttgagaccgttccagatggt |
20862581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 322
Target Start/End: Original strand, 3313 - 3414
Alignment:
| Q |
221 |
atggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcagcccttcgatgaacttcttactagacttcatcaatctgc |
320 |
Q |
| |
|
||||||||||||||||||||||| | ||||||| ||||| || | ||||| ||| ||||||||||| ||||||||||| || ||||||| | ||||| |
|
|
| T |
3313 |
atggtgatgttactcaagacataccctctcttgttcaatctataagaacgaatttctttcagcccttcaatgaacttcttgttaaacttcatgactctgc |
3412 |
T |
|
| Q |
321 |
ca |
322 |
Q |
| |
|
|| |
|
|
| T |
3413 |
ca |
3414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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