View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19697_low_7 (Length: 332)

Name: NF19697_low_7
Description: NF19697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19697_low_7
NF19697_low_7
[»] chr3 (13 HSPs)
chr3 (1-202)||(22449044-22449245)
chr3 (77-259)||(22449209-22449390)
chr3 (77-259)||(22437920-22438106)
chr3 (79-258)||(22439964-22440142)
chr3 (77-259)||(22446257-22446432)
chr3 (166-259)||(22448953-22449046)
chr3 (152-259)||(22359281-22359392)
chr3 (152-259)||(22369183-22369294)
chr3 (1-49)||(22359356-22359404)
chr3 (1-49)||(22438070-22438118)
chr3 (1-49)||(22369258-22369306)
chr3 (1-49)||(22446396-22446444)
chr3 (3-45)||(22448945-22448987)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 22449245 - 22449044
Alignment:
Q  1 tgtcactagttaaagagaagactaacttttttaattagagttaatactcaggtgcagtgtgaggtgtactttaaccatttagttttgaatgggcaaattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22449245 tgtcactagttaaagagaagactaacttttttaattagagttaatgctcaggtgcagtgtgaggtgtactttaaccatttagttttgaatgggcaaattg 22449146  T
Q  101 gctatgcaatgtgaggtgtactttaaccattttaaagtcttggtcgaaagaaagactttgttaactcaggttaaagattgtttcaaccatggtttaagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  22449145 gctatgcaatgtgaggtgtactttaaccattttaaagtcttggtcaaaagaaagactttgttaactcaggttaaagattatttcaaccatggtgtaagtt 22449046  T
Q  201 ca 202  Q
    ||    
T  22449045 ca 22449044  T

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Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 77 - 259
Target Start/End: Complemental strand, 22449390 - 22449209
Alignment:
Q  77 atttagttttgaatgggcaaattggctatgcaatgtgaggtgtactttaaccattttaaagtcttggtcgaaagaaagactttgttaactcaggttaaag 176  Q
    |||||||||||||||||||| ||||||||||||||| ||||||| ||||| ||||||||||| || ||| ||||||||||||||||||||||||||||||    
T  22449390 atttagttttgaatgggcaa-ttggctatgcaatgtaaggtgtaatttaatcattttaaagtgttagtcaaaagaaagactttgttaactcaggttaaag 22449292  T
Q  177 attgtttcaaccatggtttaagttcaatactcccaattgattcaacaatcactagttaaagagaagactagctttcttaatta 259  Q
    ||| ||||||||||||||| ||||| ||||||||||||||||||||  |||||||||||||||||||||| |||| |||||||    
T  22449291 attatttcaaccatggtttcagttctatactcccaattgattcaactgtcactagttaaagagaagactaacttttttaatta 22449209  T

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Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 77 - 259
Target Start/End: Original strand, 22437920 - 22438106
Alignment:
Q  77 atttagttttgaatgggcaaattggctatgcaatgtgaggtgtactttaaccattttaaagtcttggtcgaaagaaagactttgttaactca-----ggt 171  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||||||||||| |     |||    
T  22437920 atttagttttgaatgggcaa-ttggctatgcaatgtgaggtgtagtttaaccattttaaagccttagtcaaaagaaagactttgttaacttaactctggt 22438018  T
Q  172 taaagattgtttcaaccatggtttaagttcaatactcccaattgattcaacaatcactagttaaagagaagactagctttcttaatta 259  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||| |||| |||||||    
T  22438019 taaagattgtttcaaccatggtttaagtttaatactcccaattgattcaactgtcactagttaaagagaagactaactttgttaatta 22438106  T

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Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 79 - 258
Target Start/End: Original strand, 22439964 - 22440142
Alignment:
Q  79 ttagttttgaatgggcaaattggctatgcaatgtgaggtgtactttaaccattttaaagtcttggtcgaaagaaagactttgttaactcaggttaaagat 178  Q
    |||||||||||| | ||| ||||||||||||||||||||   ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  22439964 ttagttttgaatcgccaa-ttggctatgcaatgtgaggtaatctttaaccattttaaagtcttggacaaaagaaagactttgttaactcaggttaaagat 22440062  T
Q  179 tgtttcaaccatggtttaagttcaatactcccaattgattcaacaatcactagttaaagagaagactagctttcttaatt 258  Q
    |||||| ||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||| ||||||| ||||||    
T  22440063 tgtttccaccatggtttaagtttaataatcccaactgattcaacaatcactagttaaagagaagattagctttgttaatt 22440142  T

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Target: chr3; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 77 - 259
Target Start/End: Original strand, 22446257 - 22446432
Alignment:
Q  77 atttagttttgaatgggcaaattggctatgcaatgtgaggtgtactttaaccattttaaagtcttggtcgaaagaaagactttgttaactcaggttaaag 176  Q
    ||||||||||||||||||     ||||||||||||||||||||| |||||||||||||||| ||||||| ||||||| ||||||||||||  ||||||||    
T  22446257 atttagttttgaatgggc-----ggctatgcaatgtgaggtgtagtttaaccattttaaagacttggtcaaaagaaaaactttgttaact--ggttaaag 22446349  T
Q  177 attgtttcaaccatggtttaagttcaatactcccaattgattcaacaatcactagttaaagagaagactagctttcttaatta 259  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||| ||||||| |||| |||||||    
T  22446350 attgtttcaaccatggtttaagttcaatactccaaattgattcaactgtcactagttaaagaaaagactaactttgttaatta 22446432  T

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Target: chr3; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 166 - 259
Target Start/End: Complemental strand, 22449046 - 22448953
Alignment:
Q  166 tcaggttaaagattgtttcaaccatggtttaagttcaatactcccaattgattcaacaatcactagttaaagagaagactagctttcttaatta 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22449046 tcaggttaaagattgtttcaaccatggtttaagttcaatactcccaattgattcaacaatcactagttaaagagaagactagctttcttaatta 22448953  T

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Target: chr3; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 152 - 259
Target Start/End: Original strand, 22359281 - 22359392
Alignment:
Q  152 aagactttgttaactcaggttaaagattgtttcaaccatggtttaagttcaa----tactcccaattgattcaacaatcactagttaaagagaagactag 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||    | |||||||||||||||||  ||||||||||||||||||||||     
T  22359281 aagactttgttaactcaggttaaagattgtttcaaccatggtttaagtttaattctttctcccaattgattcaactgtcactagttaaagagaagactaa 22359380  T
Q  248 ctttcttaatta 259  Q
    |||| |||||||    
T  22359381 ctttgttaatta 22359392  T

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Target: chr3; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 152 - 259
Target Start/End: Original strand, 22369183 - 22369294
Alignment:
Q  152 aagactttgttaactcaggttaaagattgtttcaaccatggtttaagttcaa----tactcccaattgattcaacaatcactagttaaagagaagactag 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||    | |||||||||||||||||  |||||||||||||| |||||||     
T  22369183 aagactttgttaactcaggttaaagattgtttcaaccatggtttaagtttaattctttctcccaattgattcaactgtcactagttaaagaaaagactaa 22369282  T
Q  248 ctttcttaatta 259  Q
    |||| |||||||    
T  22369283 ctttgttaatta 22369294  T

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Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 22359356 - 22359404
Alignment:
Q  1 tgtcactagttaaagagaagactaacttttttaattagagttaatactc 49  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22359356 tgtcactagttaaagagaagactaactttgttaattagagttaatactc 22359404  T

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Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 22438070 - 22438118
Alignment:
Q  1 tgtcactagttaaagagaagactaacttttttaattagagttaatactc 49  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22438070 tgtcactagttaaagagaagactaactttgttaattagagttaatactc 22438118  T

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Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 22369258 - 22369306
Alignment:
Q  1 tgtcactagttaaagagaagactaacttttttaattagagttaatactc 49  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||    
T  22369258 tgtcactagttaaagaaaagactaactttgttaattagagttaatactc 22369306  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 22446396 - 22446444
Alignment:
Q  1 tgtcactagttaaagagaagactaacttttttaattagagttaatactc 49  Q
    |||||||||||||||| |||||||||||| ||||||||| |||||||||    
T  22446396 tgtcactagttaaagaaaagactaactttgttaattagaattaatactc 22446444  T

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Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 22448987 - 22448945
Alignment:
Q  3 tcactagttaaagagaagactaacttttttaattagagttaat 45  Q
    |||||||||||||||||||||| |||| |||||||||||||||    
T  22448987 tcactagttaaagagaagactagctttcttaattagagttaat 22448945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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