View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19698_high_3 (Length: 402)
Name: NF19698_high_3
Description: NF19698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19698_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 37 - 386
Target Start/End: Complemental strand, 43261071 - 43260722
Alignment:
| Q |
37 |
cagaacctgtgacataataataatcagacacaaaaatctgaaaggtcatcgaaggctttctaatttgatactaaattaactatgcattttaaaaacacaa |
136 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
43261071 |
cagaaactgtaacataataataatcagacacaaaaatctgaaaggtcatcgaaggctttctaatttgatactaaattaactatgcattttaaaaacaaaa |
43260972 |
T |
|
| Q |
137 |
atttataaataaatttgaatatacataccatcagaactcgttacccagtccaaagcaagggttccaccatcagaagtagtaaacaattgtctgaaattga |
236 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43260971 |
atttataaattaatttgaatatacataccatcagaactcgttacccagtccaaagcaagggttccaccatcagaagtagtaaacaattgtctgaaattga |
43260872 |
T |
|
| Q |
237 |
aaccaataaactactaagatttaatttatactatattcatcgatgcatatacaagaaaagactaagaatgaaaatgtgaaataacagttgtgacctttta |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43260871 |
aaccaataaactactaagatttaatttatactatattcattgatgcatatacaagaaaagactaagaatgaaaatgtgaaataacagttgtgacctttta |
43260772 |
T |
|
| Q |
337 |
tatttgaaagatggagcattcccgaagaagttgaggaaaatggtttgaag |
386 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
43260771 |
tatttgaaagatggagcattcccaaagaagttgaggaaaatggtttgaag |
43260722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 43271094 - 43271039
Alignment:
| Q |
179 |
acccagtccaaagcaagggttccaccatcagaagtagtaaacaattgtctgaaatt |
234 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
43271094 |
acccagtccagagcaatagttccaccatcaggagtattaaacaattgtctgaaatt |
43271039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University