View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19699_high_1 (Length: 807)
Name: NF19699_high_1
Description: NF19699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19699_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 721; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 721; E-Value: 0
Query Start/End: Original strand, 1 - 797
Target Start/End: Original strand, 6185961 - 6186757
Alignment:
| Q |
1 |
ttccaatgtgcaaaagctttgttgtcaacattccttctcaacaaaactccacttcttttcttctttgagttgaaagtctcaacttgaataatagaacaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6185961 |
ttccaatgtgcaaaagctttgttgtcaacattccttctcaacaaaactccacttcttttcttctttgagttgaaagtctcaacttgaataatagaacaac |
6186060 |
T |
|
| Q |
101 |
tttttgtcaagtgctccatatccattttcaactccaaaacagcccaagatagtattgctttttctgttggacttcctgaaaactcaaattcagaatccga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6186061 |
tttttgtcaagtgctccatatccattttcaactccaaaacagcccaagatagtattgctttttctgttggacttcctgaaaactcaaattcagaatccga |
6186160 |
T |
|
| Q |
201 |
acctgttttcgatttgtgaacatcaccagttgtattgagagcaactccttctttgatcaattgaagaacagatggatcaacattggaatatgcacctcct |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
6186161 |
acctgttttcgatttgtgagcatcaccagttgtattgagagcaactccttctttgatcaattgaagaacagatggatcaacattggaatatgcaccttct |
6186260 |
T |
|
| Q |
301 |
tccaatggttcaaaaccgagccaaaactttgtcaccttcatctgattcaaagtaagtgtacctattacaaatcacagaatcaaaagtaagattcttgtta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6186261 |
tccaatggttcaaaaccgagccaaaactttgtcaccttcatctgattcaaagtaagtgtacctattacaaatcacagaatcaaaagtaagattcttgtta |
6186360 |
T |
|
| Q |
401 |
caaaataaataatcacttttgaaaacagcttttaaagaatcaagtatttttcaatagtacctgttttgtcggtacaaatagtagtagcagatcccatagt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
6186361 |
caaaataaataatcacttttgaaaacagcttttaaagaatcaagtttttttcaatagtacctgttttgtcggtgcaaatagtagtagcagatcccatagt |
6186460 |
T |
|
| Q |
501 |
ctcacatgcagagagttttctcaccattgcttgatcagccatcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcagga |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6186461 |
ctcacatgcagagagttttctcaccattgcttcatcagccatcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcagga |
6186560 |
T |
|
| Q |
601 |
attgcaacaacaacaatagtaacagcatcagcaataattccaataatcgcattcatcacatcgtcgaaactagtctttctaccgttgaattctctaactc |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||| |||||||||||||||| |
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|
| T |
6186561 |
attgcaacaacaacaatagtaacagcatcagcaataattccaataattgcattcatcacatcatcaaaactcgtctttctaccattgaattctctaactc |
6186660 |
T |
|
| Q |
701 |
cgttatcagtctttgtgttaccggtgaaatatcgaatcaataaaacaaccaagactaaaaacgcgacaaccaaaccaacttttccgattgatgatgt |
797 |
Q |
| |
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|| |||||||||||| || |||||||||||||||| ||| | |||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
6186661 |
cggcatcagtctttgtattcccggtgaaatatcgaaccaagagaacaaccaggactaaaaacgcgacaaccaaaccaacttttccgatcgatgatgt |
6186757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 4236868 - 4237226
Alignment:
| Q |
1 |
ttccaatgtgcaaaagctttgttgtcaacattccttctcaacaaaactccacttcttttcttctttgagttgaaagtctcaacttgaataatagaacaac |
100 |
Q |
| |
|
|||||||||| || || || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
4236868 |
ttccaatgtgaaatagtttggttgtcaacattccttctcaacaatactccacttcttttcttctttgagttgaaagtctcaacttgaagaatagaacaac |
4236967 |
T |
|
| Q |
101 |
tttttgtcaagtgctccatatccattttcaactccaaaacagcccaagatagtattgctttttctgttggacttcctgaaaactcaaattcagaatccga |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || |
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|
| T |
4236968 |
tttttgtcaagttctccatatccattttcaattccaaaacagcccaagatagtattgctttttctgttggactaccagaaaactcaaattcagaatcaga |
4237067 |
T |
|
| Q |
201 |
acctgttttcgatttgtgaacatcaccagttgtattgagagcaactccttctttgatcaattgaagaacagatggatcaacattggaatatgcacctcct |
300 |
Q |
| |
|
||||| |||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| || |
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|
| T |
4237068 |
acctgatttcaatttgtgaacaccaccagttgtattgagagaaactccttctttgatcaattgaagaacaaatggatcaacatttgaatatgtaccaact |
4237167 |
T |
|
| Q |
301 |
tccaatggttcaaaaccgagccaaaactttgtcaccttcatctgattcaaagtaagtgt |
359 |
Q |
| |
|
|||| |||||| ||||| ||||||||||||||||||||||| ||||||| ||| ||||| |
|
|
| T |
4237168 |
tccattggttctaaaccaagccaaaactttgtcaccttcatttgattcatagtgagtgt |
4237226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 453 - 797
Target Start/End: Original strand, 4243357 - 4243701
Alignment:
| Q |
453 |
aatagtacctgttttgtcggtacaaatagtagtagcagatcccatagtctcacatgcagagagttttctcaccattgcttgatcagccatcattttcttc |
552 |
Q |
| |
|
|||||||||||| || || || |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4243357 |
aatagtacctgtcttatcagtgcaaatagtagtagctgatcccatagtttcacatgcagaaagttttctcaccattgcttgatcagccatcattttcttc |
4243456 |
T |
|
| Q |
553 |
attgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcaggaattgcaacaacaacaatagtaacagcatcagcaataattccaataatcgcat |
652 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| |||||||| || || |||||||| |||||||||||||||||||||||||||||||||| |||| |
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|
| T |
4243457 |
attgaataagcgagtgtcaatgtcacagctaatggtaaaccctcggggatagcaacaacgacaatagtaacagcatcagcaataattccaataactgcat |
4243556 |
T |
|
| Q |
653 |
tcatcacatcgtcgaaactagtctttctaccgttgaattctctaactccgttatcagtctttgtgttaccggtgaaatatcgaatcaataaaacaaccaa |
752 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||| | |
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|
| T |
4243557 |
tcatcacatcatcgaaactagtctttctaccgttgaactctctaactccgttatcagtctttgtgttcccggtgaaatatcgaatcaacagaacaacaag |
4243656 |
T |
|
| Q |
753 |
gactaaaaacgcgacaaccaaaccaacttttccgattgatgatgt |
797 |
Q |
| |
|
||||||||| |||||| |||||||||| ||||||||||| ||||| |
|
|
| T |
4243657 |
gactaaaaatgcgacagccaaaccaacctttccgattgaggatgt |
4243701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 7e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 21847719 - 21847841
Alignment:
| Q |
1 |
ttccaatgtgcaaaagctttgttgtcaacattccttctcaacaaaactccacttcttttcttctttgagttgaaagtctcaacttgaataatagaacaac |
100 |
Q |
| |
|
||||||||| || || |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
21847719 |
ttccaatgtacagtagttttgctgtcgacattccttctcaacaaaactccacttcttttcttctttgagttgaaagtctcaacttgaataatagaataac |
21847818 |
T |
|
| Q |
101 |
tttttgtcaagtgctccatatcc |
123 |
Q |
| |
|
|||||| | ||||||||||||| |
|
|
| T |
21847819 |
cttttgttaggtgctccatatcc |
21847841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 490 - 620
Target Start/End: Original strand, 38358065 - 38358195
Alignment:
| Q |
490 |
gatcccatagtctcacatgcagagagttttctcaccattgcttgatcagccatcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggca |
589 |
Q |
| |
|
||||||||||| ||||| || || ||||| |||||||| || ||||| ||||||||| | ||||| || || ||||| || | ||||||||| ||||||| |
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|
| T |
38358065 |
gatcccatagtttcacaagctgaaagtttcctcaccatagcatgatctgccatcattcttttcatggagtaagcaagagttagtgtcacagccaatggca |
38358164 |
T |
|
| Q |
590 |
aaccctcaggaattgcaacaacaacaatagt |
620 |
Q |
| |
|
|||||||||| || ||||| || |||||||| |
|
|
| T |
38358165 |
aaccctcagggatggcaacgaccacaatagt |
38358195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 569 - 627
Target Start/End: Complemental strand, 47487560 - 47487502
Alignment:
| Q |
569 |
tcaatgtcacagctaatggcaaaccctcaggaattgcaacaacaacaatagtaacagca |
627 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||| |||||||||||||| ||||||||| |
|
|
| T |
47487560 |
tcaatgtcacagctaaaggtaaaccttcaggaacagcaacaacaacaattgtaacagca |
47487502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 39951669 - 39951730
Alignment:
| Q |
540 |
catcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcaggaa |
601 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||||| ||||||||||| |||||||| |||| |
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|
| T |
39951669 |
catcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcgggaa |
39951730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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