View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19699_high_22 (Length: 237)

Name: NF19699_high_22
Description: NF19699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19699_high_22
NF19699_high_22
[»] chr7 (4 HSPs)
chr7 (1-194)||(21839453-21839646)
chr7 (18-188)||(3743718-3743889)
chr7 (20-98)||(31720225-31720303)
chr7 (21-102)||(47824955-47825037)
[»] chr4 (5 HSPs)
chr4 (27-189)||(29546392-29546555)
chr4 (2-98)||(25708128-25708225)
chr4 (20-100)||(11773820-11773900)
chr4 (20-90)||(31373442-31373512)
chr4 (18-90)||(7320596-7320668)
[»] chr3 (4 HSPs)
chr3 (1-97)||(3440351-3440447)
chr3 (21-91)||(30406280-30406351)
chr3 (17-103)||(26270073-26270159)
chr3 (21-91)||(54045156-54045226)
[»] chr6 (5 HSPs)
chr6 (2-98)||(17111450-17111546)
chr6 (2-102)||(17111622-17111722)
chr6 (1-99)||(15107118-15107216)
chr6 (20-100)||(20757288-20757368)
chr6 (1-187)||(24954688-24954875)
[»] chr2 (4 HSPs)
chr2 (13-189)||(11169627-11169807)
chr2 (22-91)||(40489786-40489855)
chr2 (22-91)||(40516287-40516356)
chr2 (20-93)||(9547846-9547919)
[»] chr5 (4 HSPs)
chr5 (22-189)||(19847730-19847898)
chr5 (20-102)||(23409603-23409685)
chr5 (20-78)||(32199992-32200049)
chr5 (19-63)||(31966712-31966756)
[»] chr1 (4 HSPs)
chr1 (20-91)||(15223321-15223392)
chr1 (21-78)||(12656909-12656966)
chr1 (22-78)||(5182117-5182173)
chr1 (27-94)||(1073337-1073404)
[»] scaffold0128 (1 HSPs)
scaffold0128 (20-97)||(42045-42122)
[»] chr8 (1 HSPs)
chr8 (13-45)||(43826602-43826634)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 21839453 - 21839646
Alignment:
Q  1 tttgccacgaataatcatgtcatttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgattttgcataacct 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21839453 tttgccacgaataatcatgtcatttctttccttctaaatcactcaagaactagcaaaccagatcaaaaacatgaaagagctccttgattttgcataacct 21839552  T
Q  101 gatggctaccaagctgtaaaatatgatccgcaagtatacatggatccactgaatgaactcctagccaattacgaacaagttgccaaattattcc 194  Q
    ||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21839553 gatggctgccaagctgtaaaatatgatccgcaagaatagatggatccactgaatgaactcctagccaattacgaacaagttgccaaattgttcc 21839646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 3743889 - 3743718
Alignment:
Q  18 tgtcatttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgattttgcataacctgatg-gctaccaagctg 116  Q
    ||||||||||||||||| | |||| |||||| ||||||||| ||||||||  | |||||||  |||||||||||||  ||||||| | | |||||| |||    
T  3743889 tgtcatttctttccttccatatcatccaagagctagcaaactagatcaaatgcgtgaaagaaatccttgattttgcgaaacctgaagaggtaccaaactg 3743790  T
Q  117 taaaatatgatccgcaagtatacatggatccactgaatgaactcctagccaattacgaacaagttgccaaat 188  Q
      ||| ||||||  |||   |  |||||||||||||||||||||| |||||| | | |||||| ||||||||    
T  3743789 ataaaaatgatctacaatgttggatggatccactgaatgaactccaagccaagtcctaacaagctgccaaat 3743718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 31720303 - 31720225
Alignment:
Q  20 tcatttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgattttgcataac 98  Q
    ||||||||||||||  ||||||||||| |||| |||||||| ||||||| |||||| |||| ||||||| |||||||||    
T  31720303 tcatttctttcctttcaaatcacccaataacttgcaaaccatatcaaaatcatgaatgagcgccttgatgttgcataac 31720225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 47824955 - 47825037
Alignment:
Q  21 catttctttccttctaaatcacccaagaactagcaaaccagatcaaaa-acatgaaagagctccttgattttgcataacctga 102  Q
    |||||| ||||||| ||||||||||||||||||| || ||| | |||| |||||||||| | |||||||||||||||||||||    
T  47824955 catttcattccttccaaatcacccaagaactagctaatcaggtaaaaaaacatgaaagaacaccttgattttgcataacctga 47825037  T

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Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 27 - 189
Target Start/End: Complemental strand, 29546555 - 29546392
Alignment:
Q  27 tttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgattttgcataacctgatgg-ctaccaagctgtaaaatatg 125  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||| |   ||||||| |||||| | ||||  |   ||| |||||||| |||    
T  29546555 tttccttctaaatcacccaaaaactagcaaaccagatcaataacatgaaagaacgtattgatttagcataatccgatgaaccgtcaaactgtaaaaaatg 29546456  T
Q  126 atccgcaagtatacatggatccactgaatgaactcctagccaattacgaacaagttgccaaatt 189  Q
    ||||||||  ||| | |||||| |||||||||||||||||||||| ||||||||||||||||||    
T  29546455 atccgcaataatagacggatccgctgaatgaactcctagccaatttcgaacaagttgccaaatt 29546392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 25708225 - 25708128
Alignment:
Q  2 ttgccacgaataatcatgtcatttctttcctt-ctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgattttgcataac 98  Q
    ||||||||||  | |||||||||||||| ||| | ||||||||||||||||||||||| ||||| ||||||||||||| || ||||||||||| ||||    
T  25708225 ttgccacgaaacaacatgtcatttcttttctttccaaatcacccaagaactagcaaactagatctaaaacatgaaagaacttcttgattttgcgtaac 25708128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 11773900 - 11773820
Alignment:
Q  20 tcatttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgattttgcataacct 100  Q
    |||||| ||||||||||||||||| |||  ||||||||||| ||||||  ||||||||| | ||||||||| |||||||||    
T  11773900 tcatttatttccttctaaatcaccgaagcgctagcaaaccaaatcaaatgcatgaaagaacaccttgatttagcataacct 11773820  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 31373442 - 31373512
Alignment:
Q  20 tcatttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgattt 90  Q
    ||||||| ||||||| ||||||||||||  ||||||||||| |||||  |||| || |||| |||||||||    
T  31373442 tcatttccttccttccaaatcacccaagtgctagcaaaccaaatcaagtacatcaaggagcaccttgattt 31373512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 7320668 - 7320596
Alignment:
Q  18 tgtcatttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgattt 90  Q
    ||||||||||||||||  |||| ||||| |||||||||||||| |||| |  ||| ||||| | |||||||||    
T  7320668 tgtcatttctttcctttcaaataacccacgaactagcaaaccaaatcagatgcattaaagaacaccttgattt 7320596  T

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Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 3440447 - 3440351
Alignment:
Q  1 tttgccacgaataatcatgtcatttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgattttgcataa 97  Q
    ||||||||||| |||| ||||||||||||||||  |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||    
T  3440447 tttgccacgaaaaatcttgtcatttctttcctttcaaatcacccaagaactcgcaaaccagatcaataacatgaaagagctccttgattttgaataa 3440351  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 30406280 - 30406351
Alignment:
Q  21 catttctttccttctaaatcacccaagaactagcaaacc-agatcaaaaacatgaaagagctccttgatttt 91  Q
    ||||| ||| |||| |||||||||||||||| ||||||| ||||||||||||||||||| | ||||||||||    
T  30406280 catttatttgcttccaaatcacccaagaacttgcaaacccagatcaaaaacatgaaagaacaccttgatttt 30406351  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 26270159 - 26270073
Alignment:
Q  17 atgtcatttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgattttgcataacctgat 103  Q
    |||||||||||||||||  | |||||||||||| | |||||||| ||||| ||||||||  ||| | ||||||| | ||||||||||    
T  26270159 atgtcatttctttcctttcagatcacccaagaagtcgcaaaccaaatcaataacatgaacaagcgctttgatttagtataacctgat 26270073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 54045156 - 54045226
Alignment:
Q  21 catttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgatttt 91  Q
    ||||| |||||||| |||| ||||||||| | ||| ||||||||| || ||||||||||| ||||||||||    
T  54045156 catttttttccttccaaattacccaagaaatcgcataccagatcacaatcatgaaagagcaccttgatttt 54045226  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 17111546 - 17111450
Alignment:
Q  2 ttgccacgaataatcatgtcatttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgattttgcataac 98  Q
    |||||||||| |||| ||| |||| |||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||    
T  17111546 ttgccacgaaaaatcctgttatttatttccttccaaatcacccaagaactcgcaaacaagatcaaaaacatgaaagagctccttgattttgaataac 17111450  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 17111722 - 17111622
Alignment:
Q  2 ttgccacgaataatcatgtcatttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgattttgcataacctg 101  Q
    |||||||||| ||||||||||||  |||||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||||||||| ||| ||||    
T  17111722 ttgccacgaaaaatcatgtcattcatttccttccaaatcacccaagaacttgcaaacaagataaaaaacatgaaagagctccttgattttgaatagcctg 17111623  T
Q  102 a 102  Q
    |    
T  17111622 a 17111622  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 15107216 - 15107118
Alignment:
Q  1 tttgccacgaataatcatgtcatttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgattttgcataacc 99  Q
    ||||||||||| |||| | ||||||||||||||| |||||| ||||||||| |||||||| ||||| ||||||||||||| ||||||||| ||||||||    
T  15107216 tttgccacgaaaaatcctatcatttctttccttccaaatcatccaagaactcgcaaaccaaatcaataacatgaaagagcaccttgatttagcataacc 15107118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 20757288 - 20757368
Alignment:
Q  20 tcatttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgattttgcataacct 100  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| | | |||||| ||||||||||    
T  20757288 tcatttctttccttccaaatcacccaagaactatcaaaccagatcaaaaacatgaaagaacacattgattatgcataacct 20757368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 24954688 - 24954875
Alignment:
Q  1 tttgccacgaataatcatgtcatttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgattttgcataacct 100  Q
    |||||||||||  ||| | ||||||||||||||| |||||||||||||| |||||||||| ||||| |||||||||||| | ||| |||||| ||| |||    
T  24954688 tttgccacgaaatatcctatcatttctttccttccaaatcacccaagaagtagcaaaccaaatcaataacatgaaagaggttcttaattttgtatatcct 24954787  T
Q  101 gatg-gctaccaagctgtaaaatatgatccgcaagtatacatggatccactgaatgaactcctagccaattacgaacaagttgccaaa 187  Q
    || |  ||  |||  ||  ||| |||||||| ||  ||| ||||||||||| |||||| |||||||||| | ||||||||||| ||||    
T  24954788 gaagaactgtcaaattgagaaaaatgatccgtaataatagatggatccactaaatgaaatcctagccaacttcgaacaagttgtcaaa 24954875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 11169627 - 11169807
Alignment:
Q  13 aatcatgtcatttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgattttgcataacctgatg-gctacca 111  Q
    ||||||||||||| |||||||  |||||||||||||||||||||| ||  |||| ||||||||||||||| ||||||||||||||||||| | || ||||    
T  11169627 aatcatgtcatttttttcctttcaaatcacccaagaactagcaaatcaactcaataacatgaaagagctcattgattttgcataacctgaagagccacca 11169726  T
Q  112 agctgtaaaatatgatccgcaagtatacatggatccactgaatgaactc----ctagccaattacgaacaagttgccaaatt 189  Q
    |  | ||||| |||||||||||  ||| ||| || | ||||||||||||    |||||||||| | ||||||||||||||||    
T  11169727 aattataaaa-atgatccgcaataatagatgaattcgctgaatgaactcctagctagccaattgcaaacaagttgccaaatt 11169807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 40489786 - 40489855
Alignment:
Q  22 atttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgatttt 91  Q
    ||||||||||||| ||||||| || ||||| |||||||||||||||||||||||||| | ||||||||||    
T  40489786 atttctttccttccaaatcacgcaggaacttgcaaaccagatcaaaaacatgaaagaacgccttgatttt 40489855  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 40516287 - 40516356
Alignment:
Q  22 atttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgatttt 91  Q
    ||||||||||||| ||||||| |||||||| ||||| ||||||||| |||||||||| | ||||||||||    
T  40516287 atttctttccttccaaatcacgcaagaacttgcaaatcagatcaaagacatgaaagaacaccttgatttt 40516356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 9547846 - 9547919
Alignment:
Q  20 tcatttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgattttgc 93  Q
    ||||||||||||||| ||||||| |||  |||||||||| | |||||| |||||||||| | ||||||||||||    
T  9547846 tcatttctttccttccaaatcactcaaacactagcaaacgaaatcaaagacatgaaagaacaccttgattttgc 9547919  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 189
Target Start/End: Complemental strand, 19847898 - 19847730
Alignment:
Q  22 atttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgattttgcataacctgatg-gctaccaagctgtaaa 120  Q
    ||||||||||||| ||||||||||||||||||||||||| || ||||||||||| || |  | ||||||||||| |||||| | | |||||| ||| | |    
T  19847898 atttctttccttccaaatcacccaagaactagcaaaccaaattaaaaacatgaaggaacgtcgtgattttgcatgacctgaagaggtaccaaactgaaga 19847799  T
Q  121 atatgatccgcaagtatacatggatccactgaatgaactcctagccaattacgaacaagttgccaaatt 189  Q
    |  |||||| |||   |  |||||||| |||||||||| |  ||| |||||| ||||||||||||||||    
T  19847798 aagtgatccacaatgtttgatggatccgctgaatgaacacacagctaattacaaacaagttgccaaatt 19847730  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 23409685 - 23409603
Alignment:
Q  20 tcatttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgattttgcataacctga 102  Q
    |||||| |||||||| ||||||  |||||||||||||| |||||||||  ||||||||| | | |||||| ||| ||||||||    
T  23409685 tcatttatttccttccaaatcattcaagaactagcaaatcagatcaaatgcatgaaagaacacattgattctgcgtaacctga 23409603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 32200049 - 32199992
Alignment:
Q  20 tcatttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaaga 78  Q
    ||||||||||||||| |||||| | |||||||||||||||| |||||| ||||||||||    
T  32200049 tcatttctttccttccaaatcatc-aagaactagcaaaccaaatcaaagacatgaaaga 32199992  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 31966712 - 31966756
Alignment:
Q  19 gtcatttctttccttctaaatcacccaagaactagcaaaccagat 63  Q
    |||||| ||| ||||| ||||||||||| ||||||||||||||||    
T  31966712 gtcattccttaccttcaaaatcacccaaaaactagcaaaccagat 31966756  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 15223321 - 15223392
Alignment:
Q  20 tcatttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgatttt 91  Q
    ||||||||||||||| |||| ||||||||||| ||||||||||||||| |||||||| | | ||||||||||    
T  15223321 tcatttctttccttccaaattacccaagaacttgcaaaccagatcaaagacatgaaataacaccttgatttt 15223392  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 12656966 - 12656909
Alignment:
Q  21 catttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaaga 78  Q
    ||||||||| |||| |||||| |||||||||||||||||| ||||||  |||||||||    
T  12656966 catttcttttcttccaaatcatccaagaactagcaaaccaaatcaaatgcatgaaaga 12656909  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 5182117 - 5182173
Alignment:
Q  22 atttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaaga 78  Q
    |||||||| |||| ||||||||||||| ||||||||||| ||||||  |||||||||    
T  5182117 atttcttttcttccaaatcacccaagagctagcaaaccatatcaaatgcatgaaaga 5182173  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 1073337 - 1073404
Alignment:
Q  27 tttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgattttgca 94  Q
    |||||||||||||||||||  | || ||||||||||| ||| |||| ||||| | |||||||||||||    
T  1073337 tttccttctaaatcacccacaagcttgcaaaccagattaaatacataaaagaacaccttgattttgca 1073404  T

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Target: scaffold0128 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 42122 - 42045
Alignment:
Q  20 tcatttctttccttctaaatcacccaagaactagcaaaccagatcaaaaacatgaaagagctccttgattttgcataa 97  Q
    ||||||||||||||| ||||||| |||||||| || ||||||||||||| |||||| ||   ||||||| ||||||||    
T  42122 tcatttctttccttccaaatcactcaagaacttgctaaccagatcaaaatcatgaaggaaagccttgatgttgcataa 42045  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 43826602 - 43826634
Alignment:
Q  13 aatcatgtcatttctttccttctaaatcaccca 45  Q
    ||||||||| |||||||||||||||||||||||    
T  43826602 aatcatgtcgtttctttccttctaaatcaccca 43826634  T

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