View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19699_high_9 (Length: 372)
Name: NF19699_high_9
Description: NF19699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19699_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 1493050 - 1493388
Alignment:
| Q |
19 |
actaagcatgcaatcaccaaactgagcctaatatttcagacactatagaacnnnnnnnnnnnnnnnntccaagaaatgggttctctcagcttcctcacct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
1493050 |
actaagcatgcaatcaccaaactgagcctaatatttcagacactatagaccaaaaacaaaaaaaaaatccaagaaatgggttctctcagcttcctcacct |
1493149 |
T |
|
| Q |
119 |
tccttgttaacctgtttcttttgcagctcataactaattgtcatgcaacaaaacttagagttgattattacagaaacacttgtccaaatgttgaatcaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1493150 |
tccttgttaacctgtttcttttgcagctcataactaattgtcatgcaacaaaacttagagttgattattacagaaacacttgtccaaatgttgaatcaat |
1493249 |
T |
|
| Q |
219 |
agtaaaaaatgcagttgagatgaaacttcagcaaacatttgttacagcacctgctacacttaggctcttcttccatgattgttttgttcaggtcagtgtt |
318 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1493250 |
agtcaaaaatgcagttgagatgaaacttcagcaaacatttgttacagcacctgctacacttaggctcttcttccatgattgttttgttcaggtcagtgtt |
1493349 |
T |
|
| Q |
319 |
ctatgtttttggaattagcagtgtcgacgtgtatctgtg |
357 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1493350 |
caatgtttttggaattagcagtgtcgacgtgtatctgtg |
1493388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 109 - 240
Target Start/End: Original strand, 1487313 - 1487442
Alignment:
| Q |
109 |
ttcctcaccttccttgttaacctgtttcttttgcagctcataactaattgtcatgcaacaaaacttagagttgattattacagaaacacttgtccaaatg |
208 |
Q |
| |
|
|||||||||||||||||||| |||||||| || ||||| ||| |||||||| ||| |||||||||| ||||| |||||||||||||| ||| || || |
|
|
| T |
1487313 |
ttcctcaccttccttgttaatctgtttctcttacagcttgtaaataattgtc--gcatcaaaacttagtgttgactattacagaaacacatgttcatatt |
1487410 |
T |
|
| Q |
209 |
ttgaatcaatagtaaaaaatgcagttgagatg |
240 |
Q |
| |
|
|||||||||| || ||||| ||||| ||||| |
|
|
| T |
1487411 |
ttgaatcaatggtccaaaatacagttaagatg |
1487442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 311
Target Start/End: Original strand, 39800538 - 39800609
Alignment:
| Q |
240 |
gaaacttcagcaaacatttgttacagcacctgctacacttaggctcttcttccatgattgttttgttcaggt |
311 |
Q |
| |
|
|||| |||| ||||| |||||||| | |||||||| ||| | |||||||| |||||||||||||||||||| |
|
|
| T |
39800538 |
gaaatttcaacaaacttttgttactgttcctgctacccttcgtctcttctttcatgattgttttgttcaggt |
39800609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 53053585 - 53053645
Alignment:
| Q |
245 |
ttcagcaaacatttgttacagcacctgctacacttaggctcttcttccatgattgttttgt |
305 |
Q |
| |
|
|||| ||||||||||| || || ||||| || ||||| || |||||||||||||||||||| |
|
|
| T |
53053585 |
ttcaacaaacatttgtcactgctcctgccactcttagacttttcttccatgattgttttgt |
53053645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University