View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19699_low_11 (Length: 329)

Name: NF19699_low_11
Description: NF19699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19699_low_11
NF19699_low_11
[»] chr1 (1 HSPs)
chr1 (2-312)||(52796111-52796421)


Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 2 - 312
Target Start/End: Original strand, 52796111 - 52796421
Alignment:
Q  2 attacggggttgtgggtttggtactagccgttttggtatggatgtggttggcaatggtgatgaaacatataagagtgaaacttggtcatcagcttccacc 101  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52796111 attacggggttgtgggtttggtactagccgttttggtatggatttggttggcaatggtgatgaaacatataagagtgaaacttggtcatcagcttccacc 52796210  T
Q  102 tggaccaagatgttggccagtgattggcaacattttccagctaggtttgtcaccaccacacgagtcctttacaatactgtctcgtagacatggtcctatc 201  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52796211 tggaccaagatgttggccagtggttggcaacattttccagctaggtttgtcaccaccacacgagtcctttacaatactgtctcgtagacatggtcctatc 52796310  T
Q  202 atgaccctttggctaggttccatgtgcaccgtagttgtctcttcctgtgaagcagcccgtgacatgttcaaaaacaacgatgcggctcttgcaggaagga 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52796311 atgaccctttggctaggttccatgtgcaccgtagttgtctcttcctgtgaagcagcccgtgacatgttcaaaaacaacgatgcggctcttgcaggaagga 52796410  T
Q  302 aggtttatgag 312  Q
    |||||||||||    
T  52796411 aggtttatgag 52796421  T

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