View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19699_low_15 (Length: 266)
Name: NF19699_low_15
Description: NF19699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19699_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 38080906 - 38081139
Alignment:
| Q |
9 |
agcagagatctatgctggaaaacattctgagagcttgtgttggattggctcctgagaacaacatgatccttgaatacaagtgaagtgaagtaatggttcg |
108 |
Q |
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| T |
38080906 |
agcagagatctatgctggaaaacattctgagagcttgtgttggattggctcctgagaacaacatgatccttgaatacaagtgaagtgaagtaatgtttcg |
38081005 |
T |
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| Q |
109 |
gttatatatataggaggaatttgggataactcagttcttatgtgcgtgcctaaaacttatcccatataggctcctttatttgttgttatattttgatatg |
208 |
Q |
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| T |
38081006 |
gt----tatataggaggaatttgggataactcagttcttatgtgcgtgcctaaaacttatcccat----gctcctttatttgttgttatattttgatatg |
38081097 |
T |
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| Q |
209 |
ttggttagcatatgtacctaccaacatttgattgtgtctttt |
250 |
Q |
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| T |
38081098 |
ttggttagcatatgtacctaccaacatttgattgtgtctttt |
38081139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 39701073 - 39701145
Alignment:
| Q |
20 |
atgctggaaaacattctgagagcttgtgttggattggctcctgagaacaacatgatccttgaatacaagtgaa |
92 |
Q |
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| T |
39701073 |
atgcttgaaaacatcatgagagcttgtgttggattggctccagagaacaacatgatcctcgagtacaagtgaa |
39701145 |
T |
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