View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19699_low_19 (Length: 247)
Name: NF19699_low_19
Description: NF19699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19699_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 6185950 - 6185728
Alignment:
| Q |
3 |
gagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagcattattcaag |
102 |
Q |
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| T |
6185950 |
gagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagcattattcaag |
6185851 |
T |
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| Q |
103 |
gtatggcagctagtagtcttcgttgcatcgctttagcgtgtacagaagtctcagacgaaaagctaggacatgaaggagacaacaccaagatggtggtaaa |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6185850 |
gtatggcagctagtagtcttcgttgcatcgctttagcgtgtacagaagtctcagacgaaaagctaggacatgaaggagacaacaccaagatggtggtaaa |
6185751 |
T |
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| Q |
203 |
agagaatgatttaacattgttag |
225 |
Q |
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||||||||||||||||||||||| |
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| T |
6185750 |
agagaatgatttaacattgttag |
6185728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 4236859 - 4236635
Alignment:
| Q |
1 |
cagagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagcattattca |
100 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||| | ||| ||||||||||||| |||||||| |
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| T |
4236859 |
cagagatggtactaagaatgtgttcaaaataccatgatggttttggaatttcgaaagatcttgacaatgaaaccatgttgaaattcgaaaggattattca |
4236760 |
T |
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| Q |
101 |
aggtatggcagctagtagtcttcgttgcatcgctttagcgtgtacagaagtctcagacgaaaagctaggacatgaaggagacaacaccaagatggtggta |
200 |
Q |
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| T |
4236759 |
aggtatggcggctagtagtcttcgttgcatcgctttagcgtatacaaaagttacagacgaagagcttgaagttgaaggagatatgaacaagatggtggta |
4236660 |
T |
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| Q |
201 |
aaagagaatgatttaacattgttag |
225 |
Q |
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||||| |||| |||||||||||||| |
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| T |
4236659 |
aaagacaatggtttaacattgttag |
4236635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 21847710 - 21847622
Alignment:
| Q |
1 |
cagagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaa |
89 |
Q |
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||||||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
21847710 |
cagagatggtactaagaatgtgttcaagatattacattggctgtggaattttgaaagatcttgacaatggatctatgttgaaattcgaa |
21847622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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