View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19699_low_21 (Length: 246)
Name: NF19699_low_21
Description: NF19699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19699_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 6485501 - 6485713
Alignment:
| Q |
17 |
aattcgcagcagaagctaaacacaaaactgcaagcttatgacccttgaggaccccaccatgttcaaattgtttatcacgttcccaaaagttaaccaatcc |
116 |
Q |
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| T |
6485501 |
aattcccagcagaagctaaacacaaaactgcaagcttatgacccttgaggactccaccatgttcaaattgcttatcacgttcccaaaagttaaccaatcc |
6485600 |
T |
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| Q |
117 |
atcagaagcaccacaataaaccattgaacctgtgctgtcaattgctaaagcagttactgcacattcttgttttaaaagttgtttaaccattacatgtttt |
216 |
Q |
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| T |
6485601 |
atcagaagcaccacaataaaccattgaacctgtgctgtcaattgctaaagcagttactgcacattcttgttttaaaagttgtttaaccattacatgtttt |
6485700 |
T |
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| Q |
217 |
gttgctttaccac |
229 |
Q |
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| T |
6485701 |
gttgctttaccac |
6485713 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 25702695 - 25702734
Alignment:
| Q |
97 |
tcccaaaagttaaccaatccatcagaagcaccacaataaa |
136 |
Q |
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| T |
25702695 |
tcccaaaagttaaccaatccatcagaagaaccgcaataaa |
25702734 |
T |
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