View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19699_low_23 (Length: 237)
Name: NF19699_low_23
Description: NF19699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19699_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2565588 - 2565808
Alignment:
| Q |
1 |
atactagtgcttggagtttgaattcttgacatatttagacttattttggtgtgccataattttatattgtacatgtattcatatttttatgaaccttcct |
100 |
Q |
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| T |
2565588 |
atactagtgcttggagtctgaattcttgacatatttagacttattttggtgtgccataattttatattgtacatgtattcatatttttatgaaccttcct |
2565687 |
T |
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| Q |
101 |
tcnnnnnnnntattttctatgaacctcataataatgtgtgctttatgaattaatcagtattggcagccttggtagaaatagattaaatgataaagtttcc |
200 |
Q |
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| T |
2565688 |
tcaaaaaaaatattttctatgaacctcataataatgtgtgctttatgaattaatcagtattggcagccttggtagaaatagattaaatgataaagtttcc |
2565787 |
T |
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| Q |
201 |
gatgttcatatacgtaattgt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
2565788 |
gatgttcatatacgtaattgt |
2565808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 111 - 221
Target Start/End: Original strand, 2555984 - 2556093
Alignment:
| Q |
111 |
tattttctatgaacctcataataatgtgtgctttatgaattaatcagtattggcagccttggtagaaatagattaaatgataaagtttccgatgttcata |
210 |
Q |
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|||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |||||||||||||| ||| |
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| T |
2555984 |
tattttttatgaacctcataa-aatgtgtactttatgaattaatcagtattggcaaccttggtagaagtagatcaaatgatcaagtttccgatgtttata |
2556082 |
T |
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| Q |
211 |
tacgtaattgt |
221 |
Q |
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||||||||||| |
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| T |
2556083 |
tacgtaattgt |
2556093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 2555920 - 2555987
Alignment:
| Q |
1 |
atactagtgcttggagtttgaattcttgacatatttagacttattttggtgtgccataattttatatt |
68 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
2555920 |
atactagtgcttagagtttgaattcttgacatatttagacttattttggtgtaccatatttttatatt |
2555987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 1830766 - 1830830
Alignment:
| Q |
145 |
atgaattaatcagtattggcagccttggtagaaatagattaaatgataaagtttccgatgttcat |
209 |
Q |
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| T |
1830766 |
atgaattaatcagtgttggcagccttggtaaaaaaagaactaatgatcaagtttccgatgttcat |
1830830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 1865209 - 1865273
Alignment:
| Q |
145 |
atgaattaatcagtattggcagccttggtagaaatagattaaatgataaagtttccgatgttcat |
209 |
Q |
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|||||||||||||| ||||||||||||||| ||| ||| |||||| ||||||||||||||||| |
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| T |
1865209 |
atgaattaatcagtgttggcagccttggtaaaaaaagaactaatgatcaagtttccgatgttcat |
1865273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 2550458 - 2550523
Alignment:
| Q |
144 |
tatgaattaatcagtattggcagccttggtagaaatagattaaatgataaagtttccgatgttcat |
209 |
Q |
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|||||||||| |||| |||| ||||||||| ||||| || ||||||| ||||||||||||||||| |
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| T |
2550458 |
tatgaattaaacagtgttggtagccttggtggaaatggagcaaatgatcaagtttccgatgttcat |
2550523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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