View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19699_low_6 (Length: 463)
Name: NF19699_low_6
Description: NF19699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19699_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 12 - 446
Target Start/End: Complemental strand, 39254534 - 39254100
Alignment:
| Q |
12 |
atgaatacaacgatcttaaagaaattcttagatccttttgatgatcccttcttgagaatgggttggggttgaggaatatgatctagggttgtttttgatt |
111 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39254534 |
atgaatacaacgaccttaaagaaattcttagatccttttgatgatcccttcttgagaatgggttggggttgaggaatatgatctagggttgtttttgatt |
39254435 |
T |
|
| Q |
112 |
ttggatcatagctaatcatagcgttctcaacctttttctccattatataaataatgaataggtgttaattgaaacaattaacaaatgttggagaaaaagg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39254434 |
ttggatcatagctaatcatagcgttctcaacctttttctccattatataaataatgaataggtgttaattgaaacaattaacaaatgttggagaaaaagg |
39254335 |
T |
|
| Q |
212 |
agagattgtaataaaggatatttaatgtaacatttttcctactacgtacaagcaggagaggaatatttgatagctagagatgaatcagtttgatgagaaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39254334 |
agagattgtaataaaggatatttaatgtaacatttttcctgctacgtacaagcaggagaggaatatttgatagctagagatgaatcagtttgatgagaaa |
39254235 |
T |
|
| Q |
312 |
tttaggaaacaaaaacaagtttatataataagaaaatttaggaaccatgatttgttattttggttttatgacgtgaagacaacaaagcacgaatgttctt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39254234 |
tttaggaaacaaaaacaagtttatataataagaaaatttaggaaccatgatttgttattttggttttatgacgtgaagacaacaaagcacgaatgttctt |
39254135 |
T |
|
| Q |
412 |
gtcagtttcaagtgttgatgtttaagaacaggttt |
446 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39254134 |
gtcagtttcaagtgttgatttttaagaacaggttt |
39254100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University