View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19699_low_7 (Length: 424)
Name: NF19699_low_7
Description: NF19699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19699_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Complemental strand, 30597010 - 30596609
Alignment:
| Q |
16 |
taaaaaagtgcaaagatctgaaggaagtatggttttgctttactgtcatctttttatattaactactaatatatccctgtaatgcagttcaatggctctt |
115 |
Q |
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| T |
30597010 |
taaaaaagtgcaaagatctgaaggaagtatggttttgctttactgtcatctttttatattaactactaatatatccctgtaatgcagttcaatggctctt |
30596911 |
T |
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| Q |
116 |
tttctgcttatttgatgataaacgttgacaatcagtttttacttttatttctgtatttagttctgaacaggaccggtttttctttacttgtgagatgagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30596910 |
tttctgcttatttgatgataaacgttgacaatcagtttttacttttatttctgtatttagttctgaacaggaccggtttttctttacttgtgagatgagt |
30596811 |
T |
|
| Q |
216 |
ggcttttcattattggtttttatcctttgttgggacaatccattaatacgatgctttcagatgattgcattcatggttttcatggactgttcatatgata |
315 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30596810 |
ggctgttcattattggtttttatcctttgttgggacaatgcattaatacgatgctttcagatgattgcattcatggttttcatggactgttcatatgata |
30596711 |
T |
|
| Q |
316 |
tttatgtatgaaaatacaacttagttgcaagaatgtataataggtaaccttnnnnnnngcctttgtttctaattatcaagtgtaattgctcatcctatgc |
415 |
Q |
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| T |
30596710 |
tttatgtatgaaaatacaacttagttgcaagaatgtataataggtaaccttaaaaaaagcctttgtttctaattatcaagtgtaattgctcatcctaagc |
30596611 |
T |
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| Q |
416 |
tt |
417 |
Q |
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|| |
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| T |
30596610 |
tt |
30596609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 6850041 - 6850116
Alignment:
| Q |
43 |
tatggttttgctttactgtcatctttttatattaactactaatatatccctgtaatgcagttcaatggctcttttt |
118 |
Q |
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| T |
6850041 |
tatggttttgctttactgtcatctttttattttaaccaataatatatccctgtaatgcagttcaatggttcttttt |
6850116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 350
Target Start/End: Original strand, 6884646 - 6884685
Alignment:
| Q |
311 |
tgatatttatgtatgaaaatacaacttagttgcaagaatg |
350 |
Q |
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| T |
6884646 |
tgatatttatgtatgaaaatacaacttagttccaagaatg |
6884685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 25462105 - 25462010
Alignment:
| Q |
17 |
aaaaaagtgcaaagatctgaaggaagtatg--gttttgctttactgtcatctttttatattaactactaatatatccctgtaatgcagttcaatgg |
110 |
Q |
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|||||| ||||||||| |||||||| ||| ||||| |||||||||||| |||||||| ||||||| ||||||| ||||||||||| |||||||| |
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| T |
25462105 |
aaaaaaatgcaaagatgtgaaggaattatattgtttttctttactgtcatatttttatagtaactacaaatatatacctgtaatgcaattcaatgg |
25462010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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