View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19699_low_8 (Length: 394)
Name: NF19699_low_8
Description: NF19699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19699_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 2565436 - 2565052
Alignment:
| Q |
1 |
cattataattctattctctcatttttacaaaggtacaatagaaatagtatacgtgtgaaattgaactttagagatgcaatttttattaaccttattccat |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2565436 |
cattataattctatgctctcatttttacaaaggtacaatagaaatagtatatgtgtgaaattgaactttagagatgaaatttttattaaccttattccat |
2565337 |
T |
|
| Q |
101 |
ggcctggtccgcaagtaacccgagtattattaataaaaaaggagccaccgttaaccgcaatacaatcatcacctatttaaaagnnnnnnnn---ctcaag |
197 |
Q |
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| T |
2565336 |
ggcctggtccgcaagtaacccgagtaatattaataaaaaaggagccaccgttaaccgcaatacaatcatcacctatttaaaagaaaaaaaaaaactcaag |
2565237 |
T |
|
| Q |
198 |
ttaaattttcgcaaatgttaaatattttaaggataatgaccttagctataaaaatagtgttttgcatttacttatactaatatgttttccacatttttca |
297 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2565236 |
ttaaattttcccaaatgttaaatattttaaggataatgaccttagctataaaaatagtgttttgcatttacttatactaatatgttttccacatttttca |
2565137 |
T |
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| Q |
298 |
tatcaatttttatgacacttctaaaataatcttaatataaactttacttaccggatcttatcttagaatcttctatcgagatatt |
382 |
Q |
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| T |
2565136 |
tatcaatttctatgacacttctaaaataatcttaatataaactttacttaccggatcttatcttagaattttctatcgagatatt |
2565052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 2555798 - 2555511
Alignment:
| Q |
1 |
cattataattctattctctcatttttacaa--aggtacaatagaaatagtatacgtgtgaaattgaactttagagatgcaatttttattaaccttattcc |
98 |
Q |
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| T |
2555798 |
cattataattctatgctctcatttttactataagctacaatagaaatagtataagtgtgaaattgtacattagagatgcaatttttattaaccttattcc |
2555699 |
T |
|
| Q |
99 |
atggcctggtccgcaagtaacccgagtattattaataaaaaaggagccaccgttaaccgcaatacaatcatcacctattta--aaagnnnnnnnnctcaa |
196 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| |
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| T |
2555698 |
atggcctggtccgcaagtaacccgagtaacattaataaaaaaggagccactattaagcgcaatacaatcatcacctatttattaaaagaaaaaaactcaa |
2555599 |
T |
|
| Q |
197 |
gttaaattttcgcaaatgttaaatattttaaggataatgaccttagctataaaaatagtgttttgcatttacttatactaatatgttt |
284 |
Q |
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| T |
2555598 |
gttaaatttccacaaatgttaaacattttaaggataaagaccttagctataaaaatagtgttttgcatttacttatacaaaaatgttt |
2555511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 2550158 - 2550057
Alignment:
| Q |
82 |
tttattaaccttattccatggcctggtccgcaagtaacccgagtattattaataaaaaaggagccaccgttaaccgcaatacaatcatcacctatttaaa |
181 |
Q |
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|
||||| |||||||| |||||||||||||| ||||||||||||||| ||| |||||| ||||||||| || || ||||||||||| ||||||||||||| |
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| T |
2550158 |
tttataaaccttatcccatggcctggtccacaagtaacccgagtagcattgataaaagtggagccaccatttactgcaatacaatcgtcacctatttaaa |
2550059 |
T |
|
| Q |
182 |
ag |
183 |
Q |
| |
|
|| |
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|
| T |
2550058 |
ag |
2550057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 374
Target Start/End: Complemental strand, 2555483 - 2555386
Alignment:
| Q |
282 |
ttttccacatttttcatatcaatttttat--gacacttctaaaataat---cttaatataaactttacttaccggatcttatcttagaatcttctatc |
374 |
Q |
| |
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|||| ||| |||||||||||||||| ||| ||||||| ||||||||| | |||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
2555483 |
tttttcacgtttttcatatcaatttctatacgacacttataaaataatgatcataatataaactttacttaccggatcttatcatagaattttctatc |
2555386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 2541916 - 2541794
Alignment:
| Q |
56 |
tgaaattgaactttagagatgcaatttttattaaccttattccatggcctggtccgcaagtaacccgagtattattaataaaaaaggagccaccgttaac |
155 |
Q |
| |
|
||||||||||||||||||| ||||||| || ||||||||||||||||| ||||| ||||||| || ||| ||| | |||| |||||||||| || | |
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| T |
2541916 |
tgaaattgaactttagagacacaatttt-ataaaccttattccatggccaggtccacaagtaatccttgtagcattgacaaaagaggagccaccattgat |
2541818 |
T |
|
| Q |
156 |
cgcaatacaatcatcacctattta |
179 |
Q |
| |
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|||||||||||||||||| |||| |
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| T |
2541817 |
ggcaatacaatcatcacctgttta |
2541794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 2532324 - 2532263
Alignment:
| Q |
56 |
tgaaattgaactttagagatgcaatttttattaaccttattccatggcctggtccgcaagtaa |
118 |
Q |
| |
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|||||| |||||||||||| ||||||| || ||||||||||||||||| ||||| ||||||| |
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| T |
2532324 |
tgaaatcgaactttagagacacaatttt-ataaaccttattccatggccaggtccacaagtaa |
2532263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 1830334 - 1830237
Alignment:
| Q |
77 |
caatttttattaaccttattccatggcctggtccgcaagtaacccgagtattattaataaaaaaggagccaccgttaaccgcaatacaatcatcacct |
174 |
Q |
| |
|
|||||||||| |||||||| ||||| || ||||| || ||||||| ||| ||| |||||| |||||||| ||||| ||||| |||||||||||| |
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| T |
1830334 |
caatttttataaaccttatcccatgaccgggtccacaggtaaccccggtaacattgataaaattagagccaccattaacagcaatgcaatcatcacct |
1830237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 1864779 - 1864682
Alignment:
| Q |
77 |
caatttttattaaccttattccatggcctggtccgcaagtaacccgagtattattaataaaaaaggagccaccgttaaccgcaatacaatcatcacct |
174 |
Q |
| |
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|||||||||| |||||||| ||||| || ||||| || ||||||| ||| ||| |||||| |||||||| ||||| ||||| |||||||||||| |
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| T |
1864779 |
caatttttataaaccttatcccatgaccgggtccacaggtaaccccggtaacattgataaaattagagccaccattaacagcaatgcaatcatcacct |
1864682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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