View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1969_high_1 (Length: 848)

Name: NF1969_high_1
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1969_high_1
NF1969_high_1
[»] chr3 (12 HSPs)
chr3 (513-832)||(4151212-4151531)
chr3 (513-832)||(4166981-4167300)
chr3 (315-504)||(4150693-4150882)
chr3 (315-504)||(4166462-4166651)
chr3 (11-131)||(4150332-4150452)
chr3 (11-131)||(4166101-4166221)
chr3 (203-324)||(4150524-4150645)
chr3 (203-324)||(4166293-4166414)
chr3 (686-762)||(7021167-7021244)
chr3 (25-102)||(13490165-13490242)
chr3 (35-102)||(777419-777486)
chr3 (527-577)||(7021004-7021054)


Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 513 - 832
Target Start/End: Original strand, 4151212 - 4151531
Alignment:
Q  513 atttcatgttttcaattttggtcttatttgcaacatatattgcatctaaatttgggttttgcagacatggtcagatgaaggatactatctagagaattat 612  Q
    |||||||| ||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4151212 atttcatgctttcactttcggtctgatttgcaacatatattgcatctaaatttgggttttgcagacatggtcaggtgaaggatactatctagagaattat 4151311  T
Q  613 gaggtgcattagtttttccaagagatcggagtaagtgtcaacaattttgcaaagagaaatctttccctagctatagatagaatgtttaagatttatttgt 712  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4151312 gaggtgcattagtttttccaagagatcggagtaagtgtcaacaattttgccaagagaaatctttccctagctatagatagaatgtttaagatttatttgt 4151411  T
Q  713 tttcctgcaacttaccgaattatcgtttctattttgtttcattttctatatttcaacatttctttgtcatgtgtttgattcttccatgtttaatttggag 812  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||    
T  4151412 tttcctgcaacttaccgaaatatcgtttctattttgtttcattttctatatttcaacatttcttcgtcacgtgtttgatttttccatgtttaatttggag 4151511  T
Q  813 accatggtatcatgtagatt 832  Q
    ||||||||||||||||||||    
T  4151512 accatggtatcatgtagatt 4151531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 513 - 832
Target Start/End: Original strand, 4166981 - 4167300
Alignment:
Q  513 atttcatgttttcaattttggtcttatttgcaacatatattgcatctaaatttgggttttgcagacatggtcagatgaaggatactatctagagaattat 612  Q
    |||||||| ||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4166981 atttcatgctttcactttcggtctgatttgcaacatatattgcatctaaatttgggttttgcagacatggtcaggtgaaggatactatctagagaattat 4167080  T
Q  613 gaggtgcattagtttttccaagagatcggagtaagtgtcaacaattttgcaaagagaaatctttccctagctatagatagaatgtttaagatttatttgt 712  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4167081 gaggtgcattagtttttccaagagatcggagtaagtgtcaacaattttgccaagagaaatctttccctagctatagatagaatgtttaagatttatttgt 4167180  T
Q  713 tttcctgcaacttaccgaattatcgtttctattttgtttcattttctatatttcaacatttctttgtcatgtgtttgattcttccatgtttaatttggag 812  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||    
T  4167181 tttcctgcaacttaccgaaatatcgtttctattttgtttcattttctatatttcaacatttcttcgtcacgtgtttgatttttccatgtttaatttggag 4167280  T
Q  813 accatggtatcatgtagatt 832  Q
    ||||||||||||||||||||    
T  4167281 accatggtatcatgtagatt 4167300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 315 - 504
Target Start/End: Original strand, 4150693 - 4150882
Alignment:
Q  315 ttgctgaaaaagtcacccttggcaaaggctgagatcatagacttgacaaggtaaatatgcattaaacttttaagaacnnnnnnncattctgatttggcct 414  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||       ||||||||||||||||    
T  4150693 ttgctgcaaaagtcacccttagcaaaggctgagatcatagacttgacaaggtaaatatgcattaaacttttcagaactttttttcattctgatttggcct 4150792  T
Q  415 ttttgttttatttcccttagtctctcttgttatgaaatgtctgtagatacattacaactctctctgatgctcctttagtaaggattgaat 504  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  4150793 ttttgttttatttcccttggtctctcttgttatgaaatgtctgtagatacattacaactctctctgatgctcgtatagtaaggattgaat 4150882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 315 - 504
Target Start/End: Original strand, 4166462 - 4166651
Alignment:
Q  315 ttgctgaaaaagtcacccttggcaaaggctgagatcatagacttgacaaggtaaatatgcattaaacttttaagaacnnnnnnncattctgatttggcct 414  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||       ||||||||||||||||    
T  4166462 ttgctgcaaaagtcacccttagcaaaggctgagatcatagacttgacaaggtaaatatgcattaaacttttcagaactttttttcattctgatttggcct 4166561  T
Q  415 ttttgttttatttcccttagtctctcttgttatgaaatgtctgtagatacattacaactctctctgatgctcctttagtaaggattgaat 504  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  4166562 ttttgttttatttcccttggtctctcttgttatgaaatgtctgtagatacattacaactctctctgatgctcgtatagtaaggattgaat 4166651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 4150332 - 4150452
Alignment:
Q  11 tcgaagaatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtacttcagtgact 110  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4150332 tcgaaaaatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctattcttgaggtacttcagtgact 4150431  T
Q  111 attggtttaggaaaaacatag 131  Q
    |||||||||||||||||||||    
T  4150432 attggtttaggaaaaacatag 4150452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 4166101 - 4166221
Alignment:
Q  11 tcgaagaatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtacttcagtgact 110  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4166101 tcgaaaaatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctattcttgaggtacttcagtgact 4166200  T
Q  111 attggtttaggaaaaacatag 131  Q
    |||||||||||||||||||||    
T  4166201 attggtttaggaaaaacatag 4166221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 203 - 324
Target Start/End: Original strand, 4150524 - 4150645
Alignment:
Q  203 aaaacatgacttgctttaaattgatcatgattcaccctccctcattgtatagactctttgcttaattcctggtttatggaaggttgatttcccttactta 302  Q
    |||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  4150524 aaaacatgacttgccttaaactgatcatgattcaccctccctcgttgcatagactctttgctcagttcctggtttatggaaggttgatttcccttactta 4150623  T
Q  303 caaaacttgaaattgctgaaaa 324  Q
    ||||||||||||||||||||||    
T  4150624 caaaacttgaaattgctgaaaa 4150645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 203 - 324
Target Start/End: Original strand, 4166293 - 4166414
Alignment:
Q  203 aaaacatgacttgctttaaattgatcatgattcaccctccctcattgtatagactctttgcttaattcctggtttatggaaggttgatttcccttactta 302  Q
    |||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  4166293 aaaacatgacttgccttaaactgatcatgattcaccctccctcgttgcatagactctttgctcagttcctggtttatggaaggttgatttcccttactta 4166392  T
Q  303 caaaacttgaaattgctgaaaa 324  Q
    ||||||||||||||||||||||    
T  4166393 caaaacttgaaattgctgaaaa 4166414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 686 - 762
Target Start/End: Original strand, 7021167 - 7021244
Alignment:
Q  686 tagatagaatgtttaaga-tttatttgttttcctgcaacttaccgaattatcgtttctattttgtttcattttctata 762  Q
    ||||||| |||||||||| ||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  7021167 tagatagcatgtttaagaatttatttattttcctgcaacttattgaattatcgtttctattttgtttcattttctata 7021244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 13490242 - 13490165
Alignment:
Q  25 ttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtactt 102  Q
    ||||||||  |||||||||||||||||||| ||  ||| ||||||||||| || |||||| |||||||| ||||||||    
T  13490242 ttggttctgctcaactggctagttgagcttgctaatattgaatcattgactgtgtcttcaactactcttcaggtactt 13490165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 777486 - 777419
Alignment:
Q  35 tcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtactt 102  Q
    |||| ||||||||||||||| ||  |||||||||| ||||||| ||||||  ||||||||||||||||    
T  777486 tcaattggctagttgagcttgctaatatcgaatcactgacagtgtcttcaaatactcttgaggtactt 777419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 577
Target Start/End: Original strand, 7021004 - 7021054
Alignment:
Q  527 attttggtcttatttgcaacatatattgcatctaaatttgggttttgcaga 577  Q
    ||||| |||| |||||||||||||||||| ||||||||| |||||| ||||    
T  7021004 atttttgtctgatttgcaacatatattgcctctaaatttaggttttacaga 7021054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University