View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_high_16 (Length: 385)
Name: NF1969_high_16
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_high_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 5 - 385
Target Start/End: Complemental strand, 32625665 - 32625285
Alignment:
| Q |
5 |
tgtccaagaatatactaataatcgtgatgataatcaaggtgaggtcaaacctttaaaaatgttgcgatggtgtgtttattctctcatcatttgttttatt |
104 |
Q |
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| T |
32625665 |
tgtccaataatatactaataatcgtgatgataatcaaggtgaggtcaaacctttaaaaatgttgcgatggtgtgtttattctctcatcatttgttttatt |
32625566 |
T |
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| Q |
105 |
ccccttcccacttacaacattgatttatatctctccatacatgttgtgctatatatgttgactttaattaatttgtttggattagtctgatactgcatgc |
204 |
Q |
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| T |
32625565 |
ccccttcccacttacaacattgatttatatctctccatacatgttgtgctatatatgttgactttaattaatttgtttggattagtctgatactgcatgc |
32625466 |
T |
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| Q |
205 |
gtaaaagttcctgaactcgaattggagctgggaagcggcaccctcgggggaattgttacaaccgttgaaggtttaattgttaaactcagtgaaagtaagt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32625465 |
gtaaaagttcctgaactcgaattggagctgggaagcggcaccctcgggggaattgttacaaccgttgaaggtttaattgttaaaatcagtgaaagtaagt |
32625366 |
T |
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| Q |
305 |
atccccccctcnnnnnnnnnnnnnnnnatacatcaagatgatgtctcctatggtgacacaattaagagaaacctttgtgga |
385 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32625365 |
atccccccctcctctctctctctctctatacatcaagatgatgtctcctatgctgacacaattaagagaaacctttgtgga |
32625285 |
T |
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