View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_high_19 (Length: 375)
Name: NF1969_high_19
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 69 - 321
Target Start/End: Complemental strand, 2381521 - 2381269
Alignment:
| Q |
69 |
ggatgtcatgtggatcacttactttaaattttgacacattaaactcattaaaattcttaaaaaatggagaattatagttcacattctcatttcattattt |
168 |
Q |
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| T |
2381521 |
ggatgtcatgtggatcacttactttaatttttgacacattaaactcattaaaattcttaaaaaatggagaattatagttcacattctcattccattattt |
2381422 |
T |
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| Q |
169 |
taacggtttcttttcaatattcacactcttattcaataaagttcacataaaactgattattttgatgatgagatcgtataatttcattaaataaaagagt |
268 |
Q |
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| T |
2381421 |
taacggtttcttttcaatattcacactcttattcaataaagttcacataaaactgattattttgatgaagagatcgtataattttattaaataaaagagt |
2381322 |
T |
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| Q |
269 |
gttaaatgtttctaatacaattatttatcatctgagttgtaattaaaatgata |
321 |
Q |
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| T |
2381321 |
gttaaatgtttctaatacaattatttatcatttgagtcgtaattaaaatgata |
2381269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 2380995 - 2380946
Alignment:
| Q |
320 |
taacaagtttacaatagtagtggaaaaaacaagaacaaactaccaacata |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2380995 |
taacaagtttacaatagtagtggaaaaaacaagaacaaactaccaacata |
2380946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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