View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_high_25 (Length: 355)
Name: NF1969_high_25
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 21011590 - 21011912
Alignment:
| Q |
17 |
aggtacatcattcactacatcaaaattgtacctgcaaaatataaacaacataacacattggcatattgcatattactattaataatcaggaaacagatcc |
116 |
Q |
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| T |
21011590 |
aggtacatcattcactacatcaaaattgtacctgcaaaatataaacaacataacacattggcatattgcatattactattaataatcaggaaacagatcc |
21011689 |
T |
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| Q |
117 |
aaagattaagattgggtcaaaagattaagatgaatacatacttttccataaataatgcttgttgctgcttctctgccaaagcaaagaactcatccatttc |
216 |
Q |
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| T |
21011690 |
aaagattaagattgggtcaaaagattaagatgaatacatacttttccataaataatgcttgttgctgcttctctgccaaagcaaagaactcatccatttc |
21011789 |
T |
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| Q |
217 |
ataagatgttggaatatttctttgcatgtgttcttgaattatgcggttcgtcctttgtcttgtggttgaaccaggggtatgaatgacacttgaatccctg |
316 |
Q |
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| T |
21011790 |
ataagatgttggaatatttctttgcatgtgttcttgaattatgtggttcgtcctttgtcttgtggttgaaccaggggtatgaatgacacttgaatccctg |
21011889 |
T |
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| Q |
317 |
attaaactacaaggtgtgctttc |
339 |
Q |
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| T |
21011890 |
attaaactacaaggtgtgctttc |
21011912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 20960195 - 20960529
Alignment:
| Q |
18 |
ggtacatcattcactacatcaaaattgtacctgcaaaatataaacaacataacacattggcatattgcatattactattaat---aatca---ggaaaca |
111 |
Q |
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| T |
20960195 |
ggtacatcattcactacatcaaaattgtacctgcaaaatataaacaatataacacattggcatattgcatattaatattaatccaaaacaaaagaaaaaa |
20960294 |
T |
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| Q |
112 |
g---atccaaagattaagattgggtcaaaagattaagatgaatacatacttttccataaataatgcttgttgctgcttctctgccaaagcaaagaactca |
208 |
Q |
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| T |
20960295 |
gtaaatcactaatttgcgattgggtcaaaagattaagatgaatacatacttttccataaataatgcttgttgctgcttctctgccaaggcaaagaattca |
20960394 |
T |
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| Q |
209 |
tccatttcataagatgttggaatatttctttgcatgtgttcttgaattatgcggttcgtcctttgtcttgtggttgaaccaggggtatgaatgacacttg |
308 |
Q |
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|||| ||||| || ||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20960395 |
tccacttcattagttgttggagtatttctttgcatgtgttcttgaataatgtggttcgtcctttgtcttgtggttgaaccaggggtatgaatgacacttg |
20960494 |
T |
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| Q |
309 |
aatccctgattaaactacaaggtgtgctttcccta |
343 |
Q |
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| T |
20960495 |
aatccctgattaaactacaaggtgtgctttcccta |
20960529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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