View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_high_28 (Length: 310)
Name: NF1969_high_28
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 38400152 - 38400441
Alignment:
| Q |
18 |
aaatgagtcatcatctaacattgtcaatcattcttagtcaattattgttagagtttcaaata---------tatgcatgatatttctccaccgtaatgct |
108 |
Q |
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| T |
38400152 |
aaatgagtcatcatttaacatcgtcaatcattcttagtcaatcattgttagagtttcaaataattttcaaatatgcaagatatttctccaccgtaatgct |
38400251 |
T |
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| Q |
109 |
actttgttcaaatacaaaatgaaatttaaggtgtaaaaaattaagtttatatatagtattttccttttattaccttaggttaggactgttcttcacggac |
208 |
Q |
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| T |
38400252 |
actttgttcaaatacaaaatgaaatttaaggtgtaaaaaattaagtttatacatagtattttccttttattaccttaggttaggactgttcttcacggac |
38400351 |
T |
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| Q |
209 |
ttcttcccgtacttcctccacttgtatccatcatccataatctcaagctctgatcttgttctaaaggctatcttttgccccacttcccct |
298 |
Q |
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| T |
38400352 |
ttcttcccgtacttcctccacttgtatccatcatccataatctcaagctctgatcttgttctaaaggctatcttttgccccgcttcccct |
38400441 |
T |
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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 273
Target Start/End: Original strand, 43387094 - 43387189
Alignment:
| Q |
178 |
ttaccttaggttaggactgttcttcacggacttcttcccgtacttcctccacttgtatccatcatccataatctcaagctctgatcttgttctaaa |
273 |
Q |
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| T |
43387094 |
ttaccttgggtatggactattcttgacagacttctttccatacttcctccatttgtatccatcatccataatctcaagctgcgatctcgttctaaa |
43387189 |
T |
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