View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_high_29 (Length: 303)
Name: NF1969_high_29
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 8852866 - 8852591
Alignment:
| Q |
18 |
cctctaactcctggtccaataaacattggatacacaacataatgtatcagtttacattagagggatgaagtttgtcttttnnnnnnnnnnnnnnnnnncc |
117 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||| || |
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| T |
8852866 |
cctctaactcctggtccaataaacattgaatacacaacataatatctcagtttacattagagggatgaagtttgtcttttaaaaagaaaaaacaaaaacc |
8852767 |
T |
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| Q |
118 |
ctgtaaactacttttatgacaaaattttgttaaatttcctccacctaactttttatgactattggacttatagattcaaatgttgaataatgtgatatta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8852766 |
ctgtaaactacttttatgacaaaattttgttaaatttcctccacctaactttttatgactattggacttatagattcaaatgttgaataatgtgatatta |
8852667 |
T |
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| Q |
218 |
acaatgttgagattccacatcaactagagatatgtctaatgtagcccttgtacactttggcaactcccaccctttg |
293 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8852666 |
acaatgttgagattccacatcaactagagatgtgtctaatgtagcccttatacactttggcaactcccaccctttg |
8852591 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 23201108 - 23201047
Alignment:
| Q |
36 |
ataaacattggatacacaacataatgtatcagtttacattagagggatgaagtttgtctttt |
97 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||| ||||| |||| ||||||||| |
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| T |
23201108 |
ataaacattggatagacaacataatgtagcagtttacattacagggacgaagcttgtctttt |
23201047 |
T |
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