View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1969_high_3 (Length: 551)

Name: NF1969_high_3
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1969_high_3
NF1969_high_3
[»] chr2 (3 HSPs)
chr2 (264-534)||(8880536-8880806)
chr2 (8-198)||(8880281-8880470)
chr2 (288-473)||(8884662-8884847)
[»] chr1 (2 HSPs)
chr1 (264-534)||(45073675-45073945)
chr1 (8-198)||(45073422-45073611)


Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 264 - 534
Target Start/End: Original strand, 8880536 - 8880806
Alignment:
Q  264 atgaaagttagtaaaacgaatttgcttacgcaagaatccattttccatcgagcaaactcaaagcatcagtggaagcgggggttggattcttagcctcaag 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8880536 atgaaagttagtaaaacgaatttgcttacgcaagaatccattttccatcgagcaaactcaaagcatcagtggaagcgggggttggattcttagcctcgag 8880635  T
Q  364 ctgactaataagctcaaaaatctccgctcttgtctcactcgccgctttcaatccacgagcagtcccataaaaggaaccaaccaagtccttcttcagcttc 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8880636 ctgactaataagctcaaaaatctccgctcttgtctcactcgccgctttcaatccacgagcagtcccataaaaggaaccaaccaagtccttcttcagcttc 8880735  T
Q  464 tccgtttcactttctggcactatcacctccgcaactgccacatcggcagaaggctctgaaccccactcatc 534  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8880736 tccgtctcactttctggcactatcacctccgcaactgccacatcggcagaaggctctgaaccccactcatc 8880806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 8880281 - 8880470
Alignment:
Q  8 agataatacttcaacctcgagtaatggcagtagcccacttgacaacaatggaaataaacctgcataggatgtataactgcggaataaatccaactatgag 107  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  8880281 agataattcttcaacctcgagtaatggcagtagcccgcttgacaacaatggaaataaacctgcataggatgtatacctgcggaataaatccaactataag 8880380  T
Q  108 tttgttagctgcagaacataagctaaaagttaacattaataataagcagaatatgagaattcccttccaaacacaaatcattgtctaacaa 198  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8880381 tttgttagctgcagaacacaagct-aaagttaacattaataataagcagaatatgagaattcccttccaaacacaaatcattgtctaacaa 8880470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 288 - 473
Target Start/End: Original strand, 8884662 - 8884847
Alignment:
Q  288 cttacgcaagaatccattttccatcgagcaaactcaaagcatcagtggaagcgggggttggattcttagcctcaagctgactaataagctcaaaaatctc 387  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||| || || ||||||||||| || |||||| |||||||||||| ||||||    
T  8884662 cttacgcaagaatccattttccattgagcaaactcaaggcatcagtggaagcaggtgtgggattcttagcttccagctgagtaataagctcaacaatctc 8884761  T
Q  388 cgctcttgtctcactcgccgctttcaatccacgagcagtcccataaaaggaaccaaccaagtccttcttcagcttctccgtttcac 473  Q
     ||||| || ||||||| |||||||||||||||| ||||||||||||| |||||||||||  ||||||||||||||||||| ||||    
T  8884762 agctctagtttcactcgtcgctttcaatccacgatcagtcccataaaacgaaccaaccaacgccttcttcagcttctccgtctcac 8884847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 264 - 534
Target Start/End: Original strand, 45073675 - 45073945
Alignment:
Q  264 atgaaagttagtaaaacgaatttgcttacgcaagaatccattttccatcgagcaaactcaaagcatcagtggaagcgggggttggattcttagcctcaag 363  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |||  ||||||||| ||    
T  45073675 atgaaagttagtaaaacgaatttgcttacgcgagaatccattttccatcgagcaaactcaaggcatcagtggaagcaggggtgggaaacttagcctcgag 45073774  T
Q  364 ctgactaataagctcaaaaatctccgctcttgtctcactcgccgctttcaatccacgagcagtcccataaaaggaaccaaccaagtccttcttcagcttc 463  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||| || |||||||||||||  ||||||||||||||||||||||||||    
T  45073775 ctgactaataagctcaaaaatctccgctcttgtctcactcgcggctttcgatccatgatcagtcccataaaacaaaccaaccaagtccttcttcagcttc 45073874  T
Q  464 tccgtttcactttctggcactatcacctccgcaactgccacatcggcagaaggctctgaaccccactcatc 534  Q
    ||||| ||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45073875 tccgtctcaatatctgtcactatcacctccgcaactgccacatcggcagaaggctctgaaccccactcatc 45073945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 45073422 - 45073611
Alignment:
Q  8 agataatacttcaacctcgagtaatggcagtagcccacttgacaacaatggaaataaacctgcataggatgtataactgcggaataaatccaactatgag 107  Q
    ||||||| |||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  45073422 agataattcttcaacctcaagaaatggcagtagcccacttgacagcaatggaaataaacctgcataggatgtatacctgcggaataaatccaaccatgag 45073521  T
Q  108 tttgttagctgcagaacataagctaaaagttaacattaataataagcagaatatgagaa-ttcccttccaaacacaaatcattgtctaacaa 198  Q
    |||||||||||||||||| || ||  |||||||| | |||||||||||||| |||| || ||||||||||||||||||||||||||||||||    
T  45073522 tttgttagctgcagaacacaaact--aagttaacgtcaataataagcagaacatgataagttcccttccaaacacaaatcattgtctaacaa 45073611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University