View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1969_high_31 (Length: 285)

Name: NF1969_high_31
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1969_high_31
NF1969_high_31
[»] chr3 (2 HSPs)
chr3 (15-277)||(9359232-9359494)
chr3 (217-262)||(53112066-53112111)
[»] chr8 (2 HSPs)
chr8 (64-275)||(32915190-32915401)
chr8 (169-272)||(24945364-24945467)
[»] chr1 (1 HSPs)
chr1 (75-275)||(2308149-2308349)
[»] scaffold0001 (1 HSPs)
scaffold0001 (78-272)||(520028-520222)
[»] chr7 (1 HSPs)
chr7 (56-151)||(43805529-43805624)
[»] chr2 (1 HSPs)
chr2 (226-269)||(41195218-41195261)
[»] chr4 (4 HSPs)
chr4 (76-110)||(26209499-26209533)
chr4 (194-266)||(5451215-5451287)
chr4 (76-108)||(26232059-26232091)
chr4 (178-266)||(51091117-51091205)


Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 277
Target Start/End: Original strand, 9359232 - 9359494
Alignment:
Q  15 acagaccaccaaaaagcaaacagcaacataaaacagctccaaaaccaattacttccttaatagacattcttgtggattccaattccattcataatataag 114  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9359232 acagaccaccaaaaagcaaacagcaacaaaaaacagctccaaaaccaattacttccttaatagacattcttgtggattccaattccattcataatataag 9359331  T
Q  115 catgtttgcatatcaagcctagacaaactccaccgccttgaattaacaacaatctccgacaagagatcatccacatgcttcacctcatttcggaagatca 214  Q
    ||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9359332 catgtttgcatatcaagcctatacaaactccaccgccacgaattaacaacaatctccgacaaaagatcatccacatgcttcacctcatttcggaagatca 9359431  T
Q  215 tatgattcctagcttgccaaatagcccaaatagttgcatgccaaataatccacaaccctttgc 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9359432 tatgattcctagcttgccaaatagcccaaatagttgcatgccaaataatccacaaccccttgc 9359494  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 53112066 - 53112111
Alignment:
Q  217 tgattcctagcttgccaaatagcccaaatagttgcatgccaaataa 262  Q
    ||||||||||||||||||||| ||||||  ||||||||||| ||||    
T  53112066 tgattcctagcttgccaaataccccaaaccgttgcatgccatataa 53112111  T

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Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 64 - 275
Target Start/End: Original strand, 32915190 - 32915401
Alignment:
Q  64 tacttccttaatagacattcttgtggattccaattccattcataatataagcatgtttgcatatcaagcctagacaaactccaccgccttgaattaacaa 163  Q
    ||||||||  ||||||||||||| ||||||||||||||||||||| |||| |||| ||| ||||  |||||| ||||||||||||||| ||||||||| |    
T  32915190 tacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgcttgtatattcagcctacacaaactccaccgccatgaattaacca 32915289  T
Q  164 caatctccgacaagagatcatccacatgcttcacctcatttcggaagatcatatgattcctagcttgccaaatagcccaaatagttgcatgccaaataat 263  Q
    |||| |||| ||| |||||||||||||| ||||||||||| || || |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  32915290 caatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgat 32915389  T
Q  264 ccacaacccttt 275  Q
    |||||| |||||    
T  32915390 ccacaaaccttt 32915401  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 272
Target Start/End: Complemental strand, 24945467 - 24945364
Alignment:
Q  169 tccgacaagagatcatccacatgcttcacctcatttcggaagatcatatgattcctagcttgccaaatagcccaaatagttgcatgccaaataatccaca 268  Q
    |||||||| | |||||||||||  ||||||||||| ||||| ||   |||||| |||||||||||||| | |||||||||||||||||||||||||||||    
T  24945467 tccgacaataaatcatccacatatttcacctcattccggaaaatacaatgatttctagcttgccaaattgaccaaatagttgcatgccaaataatccaca 24945368  T
Q  269 accc 272  Q
    ||||    
T  24945367 accc 24945364  T

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Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 75 - 275
Target Start/End: Complemental strand, 2308349 - 2308149
Alignment:
Q  75 tagacattcttgtggattccaattccattcataatataagcatgtttgcatatcaagcctagacaaactccaccgccttgaattaacaacaatctccgac 174  Q
    |||||||||||| |||||||||||||||||||||||||  || |||||||||| ||| |||||||||||||||| || |||||| || |||||||||| |    
T  2308349 tagacattcttgaggattccaattccattcataatatagacaggtttgcatattaagtctagacaaactccacctccatgaatttaccacaatctccgcc 2308250  T
Q  175 aagagatcatccacatgcttcacctcatttcggaagatcatatgattcctagcttgccaaatagcccaaatagttgcatgccaaataatccacaaccctt 274  Q
    || | ||| ||||||||  | ||||||||  |||| |||  ||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||    
T  2308249 aaaatatcttccacatgtattacctcattaaggaaaatcgaatggttcctcgcttgccaaatagcccatatagttgcatgccaaatgatccacaaacctt 2308150  T
Q  275 t 275  Q
    |    
T  2308149 t 2308149  T

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Target: scaffold0001 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 272
Target Start/End: Original strand, 520028 - 520222
Alignment:
Q  78 acattcttgtggattccaattccattcataatataagcatgtttgcatatcaagcctagacaaactccaccgccttgaattaacaacaatctccgacaag 177  Q
    ||||||||| |||||||||||||||||||| ||||  || ||||||||| ||||||||| ||||| ||||||||| ||    || |  || ||||||||     
T  520028 acattcttgaggattccaattccattcatagtatagacaagtttgcataacaagcctagtcaaacaccaccgcctcgacaacaccattatttccgacaat 520127  T
Q  178 agatcatccacatgcttcacctcatttcggaagatcatatgattcctagcttgccaaatagcccaaatagttgcatgccaaataatccacaaccc 272  Q
    |  |||||||||   ||||||||||| ||||| || | |||||| || ||||||||||| | |||||||||||||| ||||||||||| ||||||    
T  520128 aattcatccacagatttcacctcattccggaatataaaatgatttctcgcttgccaaattgaccaaatagttgcatcccaaataatccccaaccc 520222  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 43805624 - 43805529
Alignment:
Q  56 aaaccaattacttccttaatagacattcttgtggattccaattccattcataatataagcatgtttgcatatcaagcctagacaaactccaccgcc 151  Q
    ||||||| |||||||| || || || ||||| ||||||||| | |||||||||||||| || |||||||||| ||||||| |||||||||||||||    
T  43805624 aaaccaactacttcctcaaaaggcactcttgaggattccaacttcattcataatataaacaagtttgcatattaagcctatacaaactccaccgcc 43805529  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 41195218 - 41195261
Alignment:
Q  226 gcttgccaaatagcccaaatagttgcatgccaaataatccacaa 269  Q
    |||||||||||| |||||||||| ||||||||||||||||||||    
T  41195218 gcttgccaaataacccaaatagtagcatgccaaataatccacaa 41195261  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 26209533 - 26209499
Alignment:
Q  76 agacattcttgtggattccaattccattcataata 110  Q
    ||||||||||||||||||||| |||||||||||||    
T  26209533 agacattcttgtggattccaactccattcataata 26209499  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 5451215 - 5451287
Alignment:
Q  194 tcacctcatttcggaagatcatatgattcctagcttgccaaatagcccaaatagttgcatgccaaataatcca 266  Q
    |||||||||||||||  || | |||||||||| ||||| ||||| |  |||| |||| |||||||||||||||    
T  5451215 tcacctcatttcggacaataacatgattcctaacttgctaaataacttaaattgttgtatgccaaataatcca 5451287  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 26232091 - 26232059
Alignment:
Q  76 agacattcttgtggattccaattccattcataa 108  Q
    ||||||||||||||||||||| |||||||||||    
T  26232091 agacattcttgtggattccaactccattcataa 26232059  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 51091205 - 51091117
Alignment:
Q  178 agatcatccacatgcttcacctcatttcggaagatcatatgattcctagcttgccaaatagcccaaatagttgcatgccaaataatcca 266  Q
    ||||| |||||||  ||||| ||||| || || || || ||||||||| |||||||||   || ||||||||||||||||||| |||||    
T  51091205 agatcttccacatatttcacatcattccgaaaaataatgtgattcctaacttgccaaaggaccaaaatagttgcatgccaaatcatcca 51091117  T

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