View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_high_36 (Length: 259)
Name: NF1969_high_36
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_high_36 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 3884459 - 3884235
Alignment:
| Q |
20 |
aatcgctataaccattatcatggtatacaccaccattacttgtaaagaaagggatgaagtaattgcttcgatgacacaatgatcggtgacacctagaatt |
119 |
Q |
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| T |
3884459 |
aatcgctataaccattatcatggtatacaccaccattacttgtaaagaaagggatgaagtaattgcttccatgacacaatgatcggtgacacctagaatt |
3884360 |
T |
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| Q |
120 |
agttttgaaaaggttcaaattagcttaatcaacccaataatatcacatcaactctaactaaaccctttccattcaaggaaaataataattgatttagcat |
219 |
Q |
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| T |
3884359 |
agttttgaaaaggttcaaattagcttaatcaacccaataatatcacatcaactctaactaaaccctttccattcaaggaaaataataattgatttagcat |
3884260 |
T |
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| Q |
220 |
aaagatacatgcccacatgccacag |
244 |
Q |
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|||||| |||||||||||||||||| |
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| T |
3884259 |
aaagatgcatgcccacatgccacag |
3884235 |
T |
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