View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_high_42 (Length: 250)
Name: NF1969_high_42
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_high_42 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 602611 - 602850
Alignment:
| Q |
1 |
aatacgtcacggttactcacactaacacgtcggcacaaatacaatcttaaaacaatgacataattcaatacaatcacatgtgtcagtgtcgtgttggact |
100 |
Q |
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|||||| |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
602611 |
aatacgacacgattactcacactgacacgtcagcacaaatacaatcttaaaacaatgacataattcaatataatcacatgtgtcagtgtcgtgttggaca |
602710 |
T |
|
| Q |
101 |
ttgacatgtatcagacaccagtacacgtcttcaatcagaagtgtcggtactactgcgagtttctactttcaaagtgacaaatttggtcatttttgtattc |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
602711 |
ttggcatgtatcagacaccagtacacgtcttcaatcagaagtgtcggtgctactgcgagtttctactttcaaagtgacaaatttggtcatttttgtattc |
602810 |
T |
|
| Q |
201 |
aaactatatttcaaatatcactctatatagaccacctatg |
240 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
602811 |
aaacaatatttcaaatatcactctatatagaccacctatg |
602850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 153
Target Start/End: Original strand, 7942257 - 7942376
Alignment:
| Q |
34 |
cacaaatacaatcttaaaacaatgacataattcaatacaatcacatgtgtcagtgtcgtgttggactttgacatgtatcagacaccagtacacgtcttca |
133 |
Q |
| |
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||||||||||| || | |||||||||||||||||| ||||||||||||||||| |||| |||| ||||| || || ||||||| |||| ||| |
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| T |
7942257 |
cacaaatacaactttgagacaatgacataattcaatgtaatcacatgtgtcagtgctgtgtcggacactgacacgtgtcggacaccacgacacaccttag |
7942356 |
T |
|
| Q |
134 |
atcagaagtgtcggtactac |
153 |
Q |
| |
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||||||||||| ||| |||| |
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| T |
7942357 |
atcagaagtgttggtgctac |
7942376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 9024213 - 9024168
Alignment:
| Q |
54 |
aatgacataattcaatacaatcacatgtgtcagtgtcgtgttggac |
99 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||| |||| |
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|
| T |
9024213 |
aatgacataattcaatgtaatcatatgtgtcagtgtcgtgtcggac |
9024168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 3449913 - 3449869
Alignment:
| Q |
53 |
caatgacataattcaatacaatcacatgtgtcagtgtcgtgttgg |
97 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||| || |||||||| |
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|
| T |
3449913 |
caatgacataattcaatgcaatcacatgtttcaatgccgtgttgg |
3449869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 3185787 - 3185732
Alignment:
| Q |
58 |
acataattcaatacaatcacatgtgtcagtgtcgtgttggactttgacatgtatca |
113 |
Q |
| |
|
|||||||| ||| |||| ||||||||||||||||||||||| ||| ||||||||| |
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|
| T |
3185787 |
acataattaaatgcaattacatgtgtcagtgtcgtgttggatattggcatgtatca |
3185732 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 14450761 - 14450719
Alignment:
| Q |
103 |
gacatgtatcagacaccagtacacgtcttcaatcagaagtgtc |
145 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||||||||||| |
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|
| T |
14450761 |
gacatgtgtcagacaccgggacacgtcttcaatcagaagtgtc |
14450719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 9050199 - 9050130
Alignment:
| Q |
25 |
acacgtcggcacaaatacaatcttaaaacaatgacataattcaatacaatcacatgtgtcagtgtcgtgt |
94 |
Q |
| |
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|||||||| || | ||| ||| || ||| ||||||||| ||||||| ||||||||||||| ||||||||| |
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| T |
9050199 |
acacgtcgacatagataaaattttgaaaaaatgacatagttcaatataatcacatgtgtctgtgtcgtgt |
9050130 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 35238221 - 35238181
Alignment:
| Q |
54 |
aatgacataattcaatacaatcacatgtgtcagtgtcgtgt |
94 |
Q |
| |
|
||||||||||||||||| ||||||| |||| |||||||||| |
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|
| T |
35238221 |
aatgacataattcaatataatcacacgtgttagtgtcgtgt |
35238181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 5986903 - 5986871
Alignment:
| Q |
54 |
aatgacataattcaatacaatcacatgtgtcag |
86 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
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| T |
5986903 |
aatgacatgattcaatacaatcacatgtgtcag |
5986871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 22799930 - 22799890
Alignment:
| Q |
54 |
aatgacataattcaatacaatcacatgtgtcagtgtcgtgt |
94 |
Q |
| |
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|||||||||||||||| ||||||| ||||||||||||||| |
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|
| T |
22799930 |
aatgacataattcaatgtaatcacacgtgtcagtgtcgtgt |
22799890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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