View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_high_44 (Length: 250)
Name: NF1969_high_44
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_high_44 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 55 - 231
Target Start/End: Complemental strand, 416868 - 416692
Alignment:
| Q |
55 |
accaatgacccataatttttccatctggtccatgattaaatgtgattaaattaccagcatagttatgaccaccaatatgagaacatgccaaaactgatat |
154 |
Q |
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| T |
416868 |
accaatgacccataatttttccatctggtccatgactaaatgtgattaaattgccagcatacttatgaccaccaatatgagaacatgccaaaactgatat |
416769 |
T |
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| Q |
155 |
ctgatctttcaatcctcggagctgaatttcttctttgaacttgtcaatgagaatagagccacaaacaccgcacctca |
231 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||||||| | || ||||||||||| ||||||| |
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| T |
416768 |
ctgatctttcaatcctcggagctgaacttcttcattgaacttgtcaatgagcacaggcccacaaacaccacacctca |
416692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 108 - 221
Target Start/End: Original strand, 398485 - 398598
Alignment:
| Q |
108 |
ccagcatagttatgaccaccaatatgagaacatgccaaaactgatatctgatctttcaatcctcggagctgaatttcttctttgaacttgtcaatgagaa |
207 |
Q |
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|||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||| |||||||||||||| |
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| T |
398485 |
ccagcatatttatgaccaccaatatgagagcatgccataactgatatctgatctttcaatcctctgagctgaatgtcttcattgagcttgtcaatgagaa |
398584 |
T |
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| Q |
208 |
tagagccacaaaca |
221 |
Q |
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|| ||||||||| |
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| T |
398585 |
caggtccacaaaca |
398598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 405599 - 405521
Alignment:
| Q |
153 |
atctgatctttcaatcctcggagctgaatttcttctttgaacttgtcaatgagaatagagccacaaacaccgcacctca |
231 |
Q |
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| T |
405599 |
atctgatctttaaatcctttgagctgaatttcttcattgagcttgtcaatgagaacaggcccacaaacaccacacctca |
405521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 417016 - 416960
Alignment:
| Q |
1 |
tggcaatgtgttggtctagcaaggtaagcacatcattacaagtaacatagccatacc |
57 |
Q |
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| T |
417016 |
tggcaatgtgttggtctagcaaggcaggcacatcattaggagtaacatagccatacc |
416960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 22513685 - 22513814
Alignment:
| Q |
1 |
tggcaatgtgttggtctagcaaggtaagcacatcattacaagtaacatagccataccaatgacccataatttttccatctggtccatgattaaatgtgat |
100 |
Q |
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| T |
22513685 |
tggcaatgtgttggtctagcaaggcaagcacatcattacgagtaacatagccataccaatgacccataatttttccatctggtccatgattaaatgtgat |
22513784 |
T |
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| Q |
101 |
taaattaccagcatagttatgaccaccaat |
130 |
Q |
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| T |
22513785 |
taaattaccagcatagttatgaccaccaat |
22513814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 22517025 - 22517126
Alignment:
| Q |
130 |
tatgagaacatgccaaaactgatatctgatctttcaatcctcggagctgaatttcttctttgaacttgtcaatgagaatagagccacaaacaccgcacct |
229 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
22517025 |
tatgataacatgccaaaactgatatctgatctttcaatcctcggagctgaatttcttctttgaacttgtcaatgagcacagagccacaaacaccgcacct |
22517124 |
T |
|
| Q |
230 |
ca |
231 |
Q |
| |
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|| |
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|
| T |
22517125 |
ca |
22517126 |
T |
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