View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_high_45 (Length: 250)
Name: NF1969_high_45
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_high_45 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 51739692 - 51739453
Alignment:
| Q |
11 |
cataggggaacttgtgtatgatacaactaacataataatcatacagaaataaaaccttgaaccatcgatgcctaattcttgatataaataaaatgagaca |
110 |
Q |
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| T |
51739692 |
cataggggaacttgtgtatgatacaactaacataataatcatacagaaataaaaccttgaaccatcgatgcctaattcttgatataaataaaatgagaca |
51739593 |
T |
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| Q |
111 |
gatagaccaaaaattacacccattaccacaccaccacatgctaccaagctcactaaacgtagattacgcaatgcgtattgaatattcatctctaagccaa |
210 |
Q |
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| T |
51739592 |
gatagaccaaaaattacacccattaccacaccaccacatgctaccaagctcactaaacgtagattacgcaatgcgtattgaatattcatctctaagccaa |
51739493 |
T |
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| Q |
211 |
ataaaaacatgaaatttattcgacaaaagaagctcacaac |
250 |
Q |
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| T |
51739492 |
ataaaaacatgaaatttattcgacaaaagaagctcacaac |
51739453 |
T |
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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 10200216 - 10200146
Alignment:
| Q |
177 |
cgcaatgcgtattgaatattcatctctaagccaaataaaaacatgaaatttattcgacaaaagaagctcac |
247 |
Q |
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| T |
10200216 |
cgcaatgtgtagtgaatattcatttccaagccaaataaaaacatgaaatttatgcgacaaaagaagctcac |
10200146 |
T |
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