View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_high_52 (Length: 241)
Name: NF1969_high_52
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 4123779 - 4124003
Alignment:
| Q |
1 |
aaaaacaaccaatcaatccctctactcatagaatgcatcatctgcttcttcaaagcccaatcagcagcctgtggtttatcctccacagtcttcacaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4123779 |
aaaaacaaccaatcaatccctctactcatagagtgcatcatctgcttcttcaaagcccaatcagcagcctgtggtttatcctccacagtcttcacaaaca |
4123878 |
T |
|
| Q |
101 |
cacccgctctcctcaactccgaagccaaaccatacccaactttcggtttcaaaatctccctaacagcatcattatacttgtcatcaccactcacaaacct |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4123879 |
cccccgctctcctcaactccgaagccaaaccatacccaactttcggtttcaaaatctccctaacagcatcattatacttgtcatcaccactcacaaacct |
4123978 |
T |
|
| Q |
201 |
ctccttatacttctgcctcttcttc |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
4123979 |
ctccttatacttctgcctcttcttc |
4124003 |
T |
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