View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1969_high_53 (Length: 238)
Name: NF1969_high_53
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_high_53 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 37492158 - 37491938
Alignment:
| Q |
1 |
taaccaccatgcagtatgcacatacaccatgatctaatcataaaacgttgttatactatcaatgattcaattttgatgaggccttatcatctgtttaaaa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37492158 |
taaccactatgcagtatgcacatacaccatgatctaatcataaaacgttgttatactatcaatgattcaattttgatgaggccttatcatatgtttaaaa |
37492059 |
T |
|
| Q |
101 |
agattaactttgatgcactaaaacttttcacactgtcacacaaccattaaacatcatttgtatgactaaggtttatatgactaaaatcacatatatgtaa |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37492058 |
agattaattttgatgcactaaaacttttcacactgtcacacaaccattaaacatcatttgtatgactaaggtttatatgactaaaatcacatatatgtaa |
37491959 |
T |
|
| Q |
201 |
cgatcgctagtagatgatacg |
221 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
37491958 |
tgatcgctagtagatgatacg |
37491938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University