View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_high_54 (Length: 238)
Name: NF1969_high_54
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_high_54 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44878209 - 44878429
Alignment:
| Q |
1 |
ccacactatacttgtgaggcacatctcttgtattaccactcaagaaacttatcacaaagatagagagacacattgataggtctaaatggttccaaatcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44878209 |
ccacactatacttgtgaggcacatctcttgtattaccactcaagaaacttatcacaaagatagagagacacattgataggtctaaatggttccaaatcaa |
44878308 |
T |
|
| Q |
101 |
cggtcacctttttctcctgccatcacaattgtgccagtatacaaaacaagcccatttggaggaaccttgttataaagcttaagcctctgctgagcagaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44878309 |
cggtcacctttttctcctgccatcacaattgtgccagtatacaaaacaagcccatttggaggaaccttgttataaagcttaagcctcttttgagcagaag |
44878408 |
T |
|
| Q |
201 |
cgattgcaccaagcttagact |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
44878409 |
cgattgcaccaagcttagact |
44878429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 52 - 214
Target Start/End: Complemental strand, 28920796 - 28920626
Alignment:
| Q |
52 |
tcacaaagatagagagacacattgataggtctaaatggttccaaatcaacggtcacctttttctcctg-ccatca-------caattgtgccagtataca |
143 |
Q |
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|||||||||||||||||| | |||||||||||||||||||| ||||||| ||||||||||||||||| |||||| ||||||| |||||||||| |
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| T |
28920796 |
tcacaaagatagagagacgcgttgataggtctaaatggttcaaaatcaatggtcacctttttctccttaccatcatcagtcacaattgtaccagtataca |
28920697 |
T |
|
| Q |
144 |
aaacaagcccatttggaggaaccttgttataaagcttaagcctctgctgagcagaagcgattgcaccaagc |
214 |
Q |
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| T |
28920696 |
aaacaagcccgtttggagggaccttgttataaagcttaagcctctgctgagcagaagtgattgcaccaagc |
28920626 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 52 - 214
Target Start/End: Complemental strand, 42891479 - 42891309
Alignment:
| Q |
52 |
tcacaaagatagagagacacattgataggtctaaatggttccaaatcaacggtcacctttttctcctgc-------ca-tcacaattgtgccagtataca |
143 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||| |||| |||||||||||| | || ||| |||||||||| ||||| |
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| T |
42891479 |
tcacaaagatagagagacgcattgataggtctaaatggttcaaaatcaaaggtctcctttttctccttctcatcatcagtcaaaattgtgccacaataca |
42891380 |
T |
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| Q |
144 |
aaacaagcccatttggaggaaccttgttataaagcttaagcctctgctgagcagaagcgattgcaccaagc |
214 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
42891379 |
aaacaagcccatttggaggaaccttgttataaagcttaagcctctgctgggcagaactgattgcaccaagc |
42891309 |
T |
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