View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_high_57 (Length: 236)
Name: NF1969_high_57
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_high_57 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 38 - 222
Target Start/End: Complemental strand, 16968702 - 16968521
Alignment:
| Q |
38 |
attaaaaaatttggatgaagcattgcgcttaataaaatactaccgtcaaacatcaaggccacaattcagtcaacaaccacaaaaacacatagtaacattt |
137 |
Q |
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| T |
16968702 |
attaaaaaatttgtatgaagcattgcgcttaataaaatactaccgtcaaacatcaaggccacaattcagtcaacaaccacaaaaacaca---taacattt |
16968606 |
T |
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| Q |
138 |
aatagtaataccaagaggttgtaacctataagcatcattttaggcatatcaatggacattgagccaaacaatagcaagggaatgt |
222 |
Q |
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| T |
16968605 |
aatagtaataccaacaggttgtaacctctaagcatcattttaggcatatcaatggacattgagccaaacaatagcaagggaatgt |
16968521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 16969133 - 16969104
Alignment:
| Q |
1 |
tgatcttagtgttaatttttatgtattttg |
30 |
Q |
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| T |
16969133 |
tgatcttagtgttaatttttatgtattttg |
16969104 |
T |
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