View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1969_high_60 (Length: 232)

Name: NF1969_high_60
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1969_high_60
NF1969_high_60
[»] chr2 (10 HSPs)
chr2 (1-175)||(31859080-31859254)
chr2 (24-133)||(19193503-19193612)
chr2 (83-135)||(20459033-20459085)
chr2 (74-132)||(6420456-6420514)
chr2 (89-135)||(30706405-30706451)
chr2 (173-219)||(31859339-31859385)
chr2 (24-133)||(19953466-19953575)
chr2 (83-135)||(31494209-31494259)
chr2 (83-120)||(43400149-43400186)
chr2 (83-135)||(12989320-12989372)
[»] chr4 (5 HSPs)
chr4 (28-135)||(5994866-5994973)
chr4 (24-125)||(37586474-37586575)
chr4 (24-133)||(51904616-51904725)
chr4 (83-133)||(8109085-8109135)
chr4 (26-135)||(27654550-27654659)
[»] chr8 (1 HSPs)
chr8 (24-125)||(24683642-24683743)
[»] chr6 (4 HSPs)
chr6 (24-125)||(6163527-6163628)
chr6 (24-113)||(26170911-26171000)
chr6 (99-135)||(19305799-19305835)
chr6 (83-135)||(21987421-21987473)
[»] chr5 (1 HSPs)
chr5 (24-125)||(25002014-25002115)
[»] chr7 (1 HSPs)
chr7 (74-134)||(20954800-20954860)
[»] chr3 (2 HSPs)
chr3 (83-133)||(52123957-52124007)
chr3 (83-135)||(20791425-20791477)
[»] chr1 (2 HSPs)
chr1 (24-119)||(40125857-40125948)
chr1 (74-135)||(21466619-21466680)
[»] scaffold0005 (1 HSPs)
scaffold0005 (90-135)||(296973-297018)


Alignment Details
Target: chr2 (Bit Score: 139; Significance: 7e-73; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 31859080 - 31859254
Alignment:
Q  1 tgatgaaaccaatgtacgagtacgacccaccacattaagtagaactcatctccaaagtgtcaaacccaatataatttaagttaataagaaagtgattgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||    
T  31859080 tgatgaaaccaatgtacgagtacgacccaccacattaagtagaactcatctccaaagtgtcaaacccaccataatttaagttaataagaaagtgactgtt 31859179  T
Q  101 agagatagtgttgaaaagagcgtgttgctagcactctacaataattgacaaggctaaaaattcatttgttaaggt 175  Q
      |||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| |||||||||    
T  31859180 gaagatagtgttgaaaagagagtgttgctatcactgtacaataattgacaaggctaaaaattcatctgttaaggt 31859254  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 133
Target Start/End: Complemental strand, 19193612 - 19193503
Alignment:
Q  24 gacccaccacattaagtagaactcatctccaaagtgtcaaacccaatataatttaagttaataagaaagtgattgttagagatagtgttgaaaagagcgt 123  Q
    |||||||||| ||||||  |||  || |||||||| | | |||||  || ||||||  |||| ||||||||| |||| |||| |||||||||||||| ||    
T  19193612 gacccaccactttaagtgaaacctatttccaaagtatgagacccaccatgatttaaactaattagaaagtgagtgttggagagagtgttgaaaagagagt 19193513  T
Q  124 gttgctagca 133  Q
    ||||||||||    
T  19193512 gttgctagca 19193503  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 20459033 - 20459085
Alignment:
Q  83 aataagaaagtgattgttagagatagtgttgaaaagagcgtgttgctagcact 135  Q
    ||||||||||||| || | |||| |||||||||||||| ||||||||||||||    
T  20459033 aataagaaagtgagtggtggagagagtgttgaaaagagagtgttgctagcact 20459085  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 6420514 - 6420456
Alignment:
Q  74 atttaagttaataagaaagtgattgttagagatagtgttgaaaagagcgtgttgctagc 132  Q
    |||||||  ||||||||||||| || | |||| |||||||||||||| |||||||||||    
T  6420514 atttaagccaataagaaagtgagtggtggagagagtgttgaaaagagagtgttgctagc 6420456  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 30706405 - 30706451
Alignment:
Q  89 aaagtgattgttagagatagtgttgaaaagagcgtgttgctagcact 135  Q
    ||||||| |||| |||| |||||||||||||| ||||||||||||||    
T  30706405 aaagtgagtgtttgagagagtgttgaaaagagagtgttgctagcact 30706451  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 31859339 - 31859385
Alignment:
Q  173 ggtgaatatgtggagagtccaagattcaaagtccaatatctatatgt 219  Q
    |||||||| ||||||||||||| ||||||||| |||| |||||||||    
T  31859339 ggtgaatacgtggagagtccaaaattcaaagttcaatctctatatgt 31859385  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 19953466 - 19953575
Alignment:
Q  24 gacccaccacattaagtagaactcatctccaaagtgtcaaacccaatataatttaagttaataagaaagtgattgttagagatagtgttgaaaagagcgt 123  Q
    |||||||||| |||||| |||| ||| |||||||||| | || || ||| ||||||   ||||| ||||||| | || |||| | |||| ||||||| ||    
T  19953466 gacccaccactttaagtggaacccatttccaaagtgtgagactcactatgatttaatccaataaaaaagtgagtattggagaaaatgttaaaaagagagt 19953565  T
Q  124 gttgctagca 133  Q
    ||||||||||    
T  19953566 gttgctagca 19953575  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 31494259 - 31494209
Alignment:
Q  83 aataagaaagtgattgttagagatagtgttgaaaagagcgtgttgctagcact 135  Q
    ||||||| ||||| |||||||||  ||||||||||||| ||||||||||||||    
T  31494259 aataagagagtgagtgttagaga--gtgttgaaaagagagtgttgctagcact 31494209  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 43400186 - 43400149
Alignment:
Q  83 aataagaaagtgattgttagagatagtgttgaaaagag 120  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  43400186 aataagaaagtgagtgttagagagagtgttgaaaagag 43400149  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 12989320 - 12989372
Alignment:
Q  83 aataagaaagtgattgttagagatagtgttgaaaagagcgtgttgctagcact 135  Q
    ||||||| ||||| | ||||||| |||||| ||||||| ||||||||||||||    
T  12989320 aataagagagtgagtattagagagagtgttcaaaagagagtgttgctagcact 12989372  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 5994973 - 5994866
Alignment:
Q  28 caccacattaagtagaactcatctccaaagtgtcaaacccaatataatttaagttaataagaaagtgattgttagagatagtgttgaaaagagcgtgttg 127  Q
    |||||| |||||| |||| ||| ||||| |||| | |||||  || |||||||| ||| ||||||||| |||| |||| ||||||||||||||  |||||    
T  5994973 caccactttaagtggaacccatttccaatgtgtgagacccaccatgatttaagtcaattagaaagtgaatgttggagagagtgttgaaaagagactgttg 5994874  T
Q  128 ctagcact 135  Q
    ||||||||    
T  5994873 ctagcact 5994866  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 37586575 - 37586474
Alignment:
Q  24 gacccaccacattaagtagaactcatctccaaagtgtcaaacccaatataatttaagttaataagaaagtgattgttagagatagtgttgaaaagagcgt 123  Q
    |||||||||| |||||| || | ||| | |||||||| | |||||  || ||||||| |||| ||||||||| |||| |||| |||||||||||||| ||    
T  37586575 gacccaccactttaagtggatcccattttcaaagtgtgagacccaccatgatttaagctaattagaaagtgagtgttggagagagtgttgaaaagagggt 37586476  T
Q  124 gt 125  Q
    ||    
T  37586475 gt 37586474  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 133
Target Start/End: Complemental strand, 51904725 - 51904616
Alignment:
Q  24 gacccaccacattaagtagaactcatctccaaagtgtcaaacccaatataatttaagttaataagaaagtgattgttagagatagtgttgaaaagagcgt 123  Q
    |||||| ||| |||||| ||||  || | |||||||| | |||||  || |||||||  |||||||| || | ||||||||| |||||||||||||| ||    
T  51904725 gacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagagagagtgttgaaaagagagt 51904626  T
Q  124 gttgctagca 133  Q
    ||||||||||    
T  51904625 gttgctagca 51904616  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 8109085 - 8109135
Alignment:
Q  83 aataagaaagtgattgttagagatagtgttgaaaagagcgtgttgctagca 133  Q
    ||||||||||||| | ||||||| |||||| ||||||| ||||||||||||    
T  8109085 aataagaaagtgagtattagagagagtgttcaaaagagagtgttgctagca 8109135  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 27654550 - 27654659
Alignment:
Q  26 cccaccacattaagtagaactcatctccaaagtgtcaaacccaatataatttaagttaataagaaagtgattgttagagatagtgttgaaaagagcgtgt 125  Q
    |||||||| |||||| |||| ||| ||||| |||| ||| |||   | ||||||   ||||| ||| ||| |||| |||| |||||||||||||| ||||    
T  27654550 cccaccactttaagtggaacccatttccaacgtgtgaaatccaccttgatttaaaccaataataaattgagtgtttgagagagtgttgaaaagagagtgt 27654649  T
Q  126 tgctagcact 135  Q
    ||||||||||    
T  27654650 tgctagcact 27654659  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 24683642 - 24683743
Alignment:
Q  24 gacccaccacattaagtagaactcatctccaaagtgtcaaacccaatataatttaagttaataagaaagtgattgttagagatagtgttgaaaagagcgt 123  Q
    |||||||||| |||||| |||| ||| |||||| ||| | |||||  || |||||||  ||| ||||||||| |||| ||||||||||||||||||| ||    
T  24683642 gacccaccactttaagtggaacccatttccaaaatgtgagacccatcatgatttaagccaatcagaaagtgagtgttggagatagtgttgaaaagagagt 24683741  T
Q  124 gt 125  Q
    ||    
T  24683742 gt 24683743  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 6163628 - 6163527
Alignment:
Q  24 gacccaccacattaagtagaactcatctccaaagtgtcaaacccaatataatttaagttaataagaaagtgattgttagagatagtgttgaaaagagcgt 123  Q
    |||||||||| ||||||||||||||| |||||||||| | || || ||| |||||||  ||| | ||||||| ||||||||| | | |||||||||| ||    
T  6163628 gacccaccactttaagtagaactcatttccaaagtgtgagacgcactatgatttaagccaattaaaaagtgagtgttagagagaatattgaaaagagagt 6163529  T
Q  124 gt 125  Q
    ||    
T  6163528 gt 6163527  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 26171000 - 26170911
Alignment:
Q  24 gacccaccacattaagtagaactcatctccaaagtgtcaaacccaatataatttaagttaataagaaagtgattgttagagatagtgttg 113  Q
    |||||||||| |||||| |||| ||| |||||||||| |||||||  ||||||||||| | | | ||||||| |||| |||| |||||||    
T  26171000 gacccaccactttaagtggaacccatttccaaagtgtgaaacccaccataatttaagtcagttaaaaagtgagtgttggagagagtgttg 26170911  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 19305799 - 19305835
Alignment:
Q  99 ttagagatagtgttgaaaagagcgtgttgctagcact 135  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  19305799 ttagagatagtgtttaaaagagagtgttgctagcact 19305835  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 21987421 - 21987473
Alignment:
Q  83 aataagaaagtgattgttagagatagtgttgaaaagagcgtgttgctagcact 135  Q
    ||||||||||||| | ||||||| |||||| ||||||| ||| ||||||||||    
T  21987421 aataagaaagtgagtattagagagagtgttcaaaagagggtggtgctagcact 21987473  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 25002115 - 25002014
Alignment:
Q  24 gacccaccacattaagtagaactcatctccaaagtgtcaaacccaatataatttaagttaataagaaagtgattgttagagatagtgttgaaaagagcgt 123  Q
    |||||||||| |||||| || | ||| |||||||||| | ||||| ||| ||||||   ||| ||||||||| |||| |||| |||||||||||||| ||    
T  25002115 gacccaccactttaagtggagcccatttccaaagtgtgagacccactatgatttaaaccaattagaaagtgagtgttggagagagtgttgaaaagagagt 25002016  T
Q  124 gt 125  Q
    ||    
T  25002015 gt 25002014  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 20954800 - 20954860
Alignment:
Q  74 atttaagttaataagaaagtgattgttagagatagtgttgaaaagagcgtgttgctagcac 134  Q
    |||||||  ||||| ||||||| |||| |||| |||||||||||||| |||||||||||||    
T  20954800 atttaagccaataaaaaagtgagtgtttgagagagtgttgaaaagagagtgttgctagcac 20954860  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 52124007 - 52123957
Alignment:
Q  83 aataagaaagtgattgttagagatagtgttgaaaagagcgtgttgctagca 133  Q
    ||||||||||||| | ||||||| |||||| ||||||| ||||||||||||    
T  52124007 aataagaaagtgagtattagagagagtgttcaaaagagagtgttgctagca 52123957  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 20791425 - 20791477
Alignment:
Q  83 aataagaaagtgattgttagagatagtgttgaaaagagcgtgttgctagcact 135  Q
    ||||||||||||| | ||||||| |||||| ||||||| ||| ||||||||||    
T  20791425 aataagaaagtgagtattagagagagtgttcaaaagagagtggtgctagcact 20791477  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 40125948 - 40125857
Alignment:
Q  24 gacccaccacattaagtagaactcatctccaaagtgtcaaacccaatataatttaagttaataagaaagtgattgttagagatagtgttgaaaaga 119  Q
    |||||||||| |||||| |||  ||| |||||||||| | |||    ||||||||||| ||| ||||||||| |||| |||| |||||||||||||    
T  40125948 gacccaccactttaagtggaatccatttccaaagtgtgagacc----ataatttaagtcaattagaaagtgaatgttggagagagtgttgaaaaga 40125857  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 21466680 - 21466619
Alignment:
Q  74 atttaagttaataagaaagtgattgttagagatagtgttgaaaagagcgtgttgctagcact 135  Q
    |||||| | ||||||||||||| | ||||||| |||||| ||||||| ||| ||||||||||    
T  21466680 atttaaatcaataagaaagtgaatattagagagagtgttcaaaagagagtggtgctagcact 21466619  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 296973 - 297018
Alignment:
Q  90 aagtgattgttagagatagtgttgaaaagagcgtgttgctagcact 135  Q
    |||||| |||| |||| |||||||||||||| ||||||||||||||    
T  296973 aagtgagtgtttgagagagtgttgaaaagagagtgttgctagcact 297018  T

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