View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_low_10 (Length: 439)
Name: NF1969_low_10
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 5e-97; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 24 - 245
Target Start/End: Complemental strand, 4359552 - 4359321
Alignment:
| Q |
24 |
tacgtccatgattttttaaagtcacgtgacattttcatttagactacacaatctcacgtgagattcaactacaacctcttaactcttaaggcaacacaaa |
123 |
Q |
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| T |
4359552 |
tacgtccatgattttttatagtcacgtgacattttcatttaaactacacaatctcacgtgagattcaactacaacctcttaactcttaaggcaacacaaa |
4359453 |
T |
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| Q |
124 |
cccacccacccaagcactaaataataaaaccacgtttttctttctccc--ctttccc--------atatatatatagacccattacccttcctcctcaat |
213 |
Q |
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| T |
4359452 |
cccacccacccaagcactaaataataaaaccacgtttttctttctcccctctttcccatatatatatatatatatagacccattacccttcctcctcaat |
4359353 |
T |
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| Q |
214 |
tcatccctttctttgtgtttcaatatctctct |
245 |
Q |
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||| |||||||||||||||||||||||||||| |
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| T |
4359352 |
tcaaccctttctttgtgtttcaatatctctct |
4359321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 346 - 439
Target Start/End: Original strand, 4349627 - 4349720
Alignment:
| Q |
346 |
gtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatggacc |
439 |
Q |
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| T |
4349627 |
gtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatggacc |
4349720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 346 - 439
Target Start/End: Original strand, 4353014 - 4353107
Alignment:
| Q |
346 |
gtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatggacc |
439 |
Q |
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| T |
4353014 |
gtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggtatatcaaagggaaaactaatgatggacc |
4353107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 346 - 439
Target Start/End: Complemental strand, 4359257 - 4359164
Alignment:
| Q |
346 |
gtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatggacc |
439 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4359257 |
gtaccaataattactaagagagtatggagtatgatacgtgtggccttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatggacc |
4359164 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 4352866 - 4352931
Alignment:
| Q |
181 |
atatatatagacccattacccttcctcctcaattcatccctttctttgtgtttcaatatctctctc |
246 |
Q |
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| T |
4352866 |
atatatatacacccatttcccttcctcttcaattcatccctttctttgtgtttcaatatctctctc |
4352931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 4349463 - 4349507
Alignment:
| Q |
179 |
atatatatatagacccattacccttcctcctcaattcatcccttt |
223 |
Q |
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||||||||||| |||||| |||||||||| ||||||||||||||| |
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| T |
4349463 |
atatatatatatacccatcacccttcctcttcaattcatcccttt |
4349507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 361 - 436
Target Start/End: Complemental strand, 43486230 - 43486155
Alignment:
| Q |
361 |
aagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatgg |
436 |
Q |
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|||||||| ||||||||| ||||||| || || |||||||| ||||||||||| |||||||||||||| ||||||| |
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| T |
43486230 |
aagagagtgtggagtatggtacgtgtagccttcttcatgttgagaaaaggcatttcaaagggaaaactgatgatgg |
43486155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 436
Target Start/End: Complemental strand, 43475611 - 43475536
Alignment:
| Q |
361 |
aagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatgg |
436 |
Q |
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|||| ||| ||||||||| |||||||||| || |||||||| |||||||| || |||||||| ||||||||||||| |
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| T |
43475611 |
aagaaagtgtggagtatggtacgtgtggccttcttcatgttgagaaaaggtatgtcaaagggcaaactaatgatgg |
43475536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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