View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1969_low_13 (Length: 417)

Name: NF1969_low_13
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1969_low_13
NF1969_low_13
[»] chr8 (12 HSPs)
chr8 (19-408)||(1781597-1781986)
chr8 (66-137)||(18608732-18608803)
chr8 (343-405)||(1771035-1771097)
chr8 (70-136)||(10341065-10341131)
chr8 (66-136)||(25953263-25953333)
chr8 (66-136)||(34108259-34108329)
chr8 (70-136)||(43956957-43957023)
chr8 (66-136)||(14315015-14315085)
chr8 (66-136)||(14318719-14318789)
chr8 (66-136)||(18494280-18494350)
chr8 (66-136)||(26981980-26982050)
chr8 (66-136)||(26987093-26987163)
[»] chr4 (12 HSPs)
chr4 (70-136)||(18737192-18737258)
chr4 (70-136)||(18670870-18670936)
chr4 (19-128)||(47071446-47071553)
chr4 (71-136)||(32429392-32429457)
chr4 (70-128)||(18716527-18716585)
chr4 (66-136)||(30019954-30020024)
chr4 (70-136)||(34128345-34128411)
chr4 (66-136)||(34279595-34279665)
chr4 (69-128)||(54859264-54859323)
chr4 (66-128)||(14643834-14643896)
chr4 (66-136)||(3424803-3424874)
chr4 (66-136)||(35096058-35096128)
[»] chr1 (13 HSPs)
chr1 (66-136)||(17414640-17414710)
chr1 (66-136)||(35626202-35626272)
chr1 (66-136)||(10186683-10186753)
chr1 (66-136)||(43358783-43358853)
chr1 (66-134)||(19310856-19310924)
chr1 (70-128)||(21431780-21431838)
chr1 (70-136)||(44524130-44524196)
chr1 (66-136)||(1187858-1187927)
chr1 (66-136)||(3465503-3465573)
chr1 (66-136)||(3468097-3468167)
chr1 (66-136)||(28574327-28574397)
chr1 (66-136)||(28598339-28598409)
chr1 (70-136)||(13654365-13654433)
[»] chr3 (22 HSPs)
chr3 (66-134)||(18024252-18024320)
chr3 (66-136)||(20891089-20891159)
chr3 (69-136)||(3187561-3187628)
chr3 (66-136)||(5458116-5458186)
chr3 (66-136)||(5481592-5481662)
chr3 (66-136)||(6858159-6858229)
chr3 (66-136)||(8458341-8458411)
chr3 (66-136)||(8464780-8464850)
chr3 (70-136)||(29827454-29827520)
chr3 (70-136)||(49784526-49784592)
chr3 (66-136)||(1302349-1302419)
chr3 (66-136)||(4049837-4049907)
chr3 (66-128)||(6853056-6853118)
chr3 (66-136)||(10584962-10585032)
chr3 (66-136)||(10591399-10591469)
chr3 (66-136)||(10673042-10673112)
chr3 (66-136)||(10678157-10678227)
chr3 (66-136)||(31076506-31076576)
chr3 (66-136)||(31081611-31081681)
chr3 (66-136)||(33702704-33702774)
chr3 (66-136)||(33703329-33703399)
chr3 (66-136)||(4054971-4055041)
[»] chr7 (12 HSPs)
chr7 (70-136)||(4181490-4181556)
chr7 (66-136)||(14610394-14610464)
chr7 (67-127)||(5440393-5440453)
chr7 (67-127)||(5449403-5449463)
chr7 (66-125)||(37459945-37460004)
chr7 (66-136)||(12851704-12851774)
chr7 (66-136)||(12856819-12856889)
chr7 (66-136)||(26051051-26051121)
chr7 (66-136)||(26056164-26056234)
chr7 (66-136)||(26060410-26060480)
chr7 (66-136)||(26065523-26065593)
chr7 (71-136)||(11056655-11056720)
[»] chr6 (9 HSPs)
chr6 (66-136)||(24508932-24509002)
chr6 (70-136)||(2887520-2887586)
chr6 (66-136)||(21936784-21936854)
chr6 (70-136)||(2889242-2889308)
chr6 (66-136)||(11183270-11183340)
chr6 (66-128)||(24509741-24509803)
chr6 (66-136)||(21275803-21275873)
chr6 (68-136)||(21937600-21937668)
chr6 (66-136)||(20752222-20752292)
[»] chr2 (7 HSPs)
chr2 (72-136)||(716297-716361)
chr2 (66-136)||(30283545-30283615)
chr2 (66-136)||(14917486-14917556)
chr2 (70-136)||(16284467-16284534)
chr2 (66-136)||(17720630-17720700)
chr2 (66-136)||(45120416-45120486)
chr2 (92-136)||(42780214-42780258)
[»] chr5 (10 HSPs)
chr5 (66-136)||(13556409-13556479)
chr5 (77-136)||(35369006-35369065)
chr5 (57-128)||(43540854-43540925)
chr5 (66-136)||(2022994-2023064)
chr5 (66-136)||(4555683-4555753)
chr5 (66-136)||(9877643-9877713)
chr5 (66-136)||(39903875-39903945)
chr5 (66-136)||(39908988-39909058)
chr5 (66-136)||(9872528-9872598)
chr5 (72-128)||(25184130-25184186)
[»] scaffold0005 (1 HSPs)
scaffold0005 (66-128)||(173396-173458)
[»] scaffold0223 (1 HSPs)
scaffold0223 (67-136)||(2124-2193)
[»] scaffold0006 (1 HSPs)
scaffold0006 (70-136)||(144126-144194)


Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 408
Target Start/End: Complemental strand, 1781986 - 1781597
Alignment:
Q  19 gtttgacatttggacattaatttggaggacacaacaacagaaattccgttacattaacaacataattatccctcattctcttactcaaaatcatccacca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1781986 gtttgacatttggacattaatttggaggacacaacaacagaaattccgttacattaacaacataattatccctcattctcttactcaaaatcatccacca 1781887  T
Q  119 attctctaattcatgagtttcacaattattttaatttgcttcatgtgtgtactccatgtgtttgttgaaacgtttgagagcgattattttgtcattattg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1781886 attctctaattcatgagtttcacaattattttaatttgcttcatgtgtgtactccatgtgtttgttgaaacgtttgagagcgattattttgtcattattg 1781787  T
Q  219 tatttgagtaaaagacttatcgtttctatcaccaaattcatcattctatttgctttgcaagtggcttgtcaacatgtggttgaatagtcgaaatgactga 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1781786 tatttgagtaaaagacttatcgtttctatcaccaaattcatcattctatttgctttgcaagtggcttgtcaacatgtggttgaatagtcgaaatgactga 1781687  T
Q  319 acaccaacaataannnnnnnacgaggatggatgtaattaaagcatatgaatcttttattactctttaccattgaccatatgtagaataat 408  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1781686 acaccaacaataatttttttacgaggatggatgtaattaaagcatatgaatcttttattactctttaccattgaccatatgtagaataat 1781597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 66 - 137
Target Start/End: Original strand, 18608732 - 18608803
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagtt 137  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||| ||||||||    
T  18608732 gttacattaacaacataattctccctcattctcttactctaaatcatccatcaattctctaatgcatgagtt 18608803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 343 - 405
Target Start/End: Complemental strand, 1771097 - 1771035
Alignment:
Q  343 ggatggatgtaattaaagcatatgaatcttttattactctttaccattgaccatatgtagaat 405  Q
    ||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||| ||||    
T  1771097 ggatggatgcaattaaagtctatgaatcttttattactctttaccattgaccatatgtggaat 1771035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 10341065 - 10341131
Alignment:
Q  70 cattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||  ||||||||||| |||||||    
T  10341065 cattaacaacataattctccctcattctcttactctaaatcatccataaattctctaatgcatgagt 10341131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 25953263 - 25953333
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| ||| |||||||| ||||| |||||||||| ||||| |||||| |||||||    
T  25953263 gttacattaacaacataattctccatcattctcatactctaaatcatccatcaattgtctaatgcatgagt 25953333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 34108329 - 34108259
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | | ||||||| ||| || |||||||||| |||||||||||| |||||||    
T  34108329 gttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgagt 34108259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 43956957 - 43957023
Alignment:
Q  70 cattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||| | | ||||||||||| || |||||||||| |||||||||||| |||||||    
T  43956957 cattaacaacataattcttcatcattctcttattctaaatcatccatcaattctctaatgcatgagt 43957023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 14315015 - 14315085
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  14315015 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 14315085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 14318719 - 14318789
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  14318719 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 14318789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 18494280 - 18494350
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  18494280 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 18494350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 26981980 - 26982050
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  26981980 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 26982050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 26987093 - 26987163
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  26987093 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 26987163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 18737258 - 18737192
Alignment:
Q  70 cattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  18737258 cattaacaacataattctccctcattctcttactctaaatcatccatcaattctctaattcatgagt 18737192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 18670936 - 18670870
Alignment:
Q  70 cattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||| |||||||    
T  18670936 cattaacaacataattctccctcattctcttactctaaatcatccatcaattctctaatgcatgagt 18670870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 47071553 - 47071446
Alignment:
Q  19 gtttgacatttggacattaatttggaggacacaacaacagaaattccgttacattaacaacataattatccctcattctcttactcaaaatcatccacca 118  Q
    |||| |||||||| ||||||||||||  |||  | ||||||||||  |||||||||||||||||||| |||||||||||||||||| |||| ||| | ||    
T  47071553 gtttaacatttgggcattaatttggacaaca--agaacagaaattttgttacattaacaacataattctccctcattctcttactctaaattatctatca 47071456  T
Q  119 attctctaat 128  Q
    ||||||||||    
T  47071455 attctctaat 47071446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 32429392 - 32429457
Alignment:
Q  71 attaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| ||||||| |||| |||||||    
T  32429392 attaacaacataattctccctcattctcttactctaaatcatccatcaattctttaatgcatgagt 32429457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 18716585 - 18716527
Alignment:
Q  70 cattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaat 128  Q
    |||||||||||||||| |||| ||||||||||||| |||||||||| ||||||||||||    
T  18716585 cattaacaacataattctcccccattctcttactctaaatcatccatcaattctctaat 18716527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 30019954 - 30020024
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  ||||||||||||| |||||||||| |||||||||||| |||||||    
T  30019954 gttacattaacaacataattcttcaccattctcttactctaaatcatccatcaattctctaatgcatgagt 30020024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 34128345 - 34128411
Alignment:
Q  70 cattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||| ||||||| |||||||||||||||||| |||||||||| ||||| |||||| |||||||    
T  34128345 cattaacatcataattctccctcattctcttactctaaatcatccatcaattttctaatgcatgagt 34128411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 34279595 - 34279665
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |||| ||||||||||| |||||| ||| |||||||||||| |||||||    
T  34279595 gttacattaacaacataattcttcctcgttctcttactctaaatcaaccatcaattctctaatgcatgagt 34279665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 54859264 - 54859323
Alignment:
Q  69 acattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaat 128  Q
    ||||||||||||| ||| |||||||||||||| ||| |||||||||| ||||||||||||    
T  54859264 acattaacaacatgattctccctcattctcttgctctaaatcatccatcaattctctaat 54859323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 14643834 - 14643896
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaat 128  Q
    ||||||| |||||||||||| | ||| |||||||||||| |||||||||| ||||||||||||    
T  14643834 gttacatcaacaacataattcttcctaattctcttactctaaatcatccatcaattctctaat 14643896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 3424803 - 3424874
Alignment:
Q  66 gttacattaacaacataat-tatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    ||||| ||||||||||||  | |||||||||||||||||| ||||||||||  ||||||||||| |||||||    
T  3424803 gttactttaacaacataagatctccctcattctcttactctaaatcatccattaattctctaatgcatgagt 3424874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 35096128 - 35096058
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  35096128 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 35096058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 17414640 - 17414710
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||| |||||||    
T  17414640 gttacattaacaacataattctccctcattctcttactctaaatcatccatcaattctctaatgcatgagt 17414710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 35626272 - 35626202
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||| |||||||    
T  35626272 gttacattaacaacataattctccctcattctcttactctaaatcatccatcaattctctaatgcatgagt 35626202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 10186683 - 10186753
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| ||| |||||||||||||| |||||||||| |||||||||||| |||||||    
T  10186683 gttacattaacaacataattctccatcattctcttactctaaatcatccatcaattctctaatgcatgagt 10186753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 43358853 - 43358783
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| |||||||||||||||||| |||| ||||| |||||||||||| |||||||    
T  43358853 gttacattaacaacataattctccctcattctcttactctaaattatccatcaattctctaatgcatgagt 43358783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 19310924 - 19310856
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatga 134  Q
    ||||||||||||| |||||| |||||||||||||||||  |||||||||| |||||||||||| |||||    
T  19310924 gttacattaacaatataattctccctcattctcttactataaatcatccatcaattctctaatgcatga 19310856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 21431780 - 21431838
Alignment:
Q  70 cattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaat 128  Q
    |||||||||||||||| ||||||||||||||| || |||||||||| ||||||||||||    
T  21431780 cattaacaacataattctccctcattctcttaatctaaatcatccatcaattctctaat 21431838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 44524130 - 44524196
Alignment:
Q  70 cattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||| ||| |||||||||||||  |||||||||| |||||||||||| |||||||    
T  44524130 cattaacaacataattctccatcattctcttactttaaatcatccatcaattctctaatgcatgagt 44524196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 1187927 - 1187858
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||| | ||| |||||||||||||| |||||||||| ||||||| |||| |||||||    
T  1187927 gttacattaacaacataaatctcc-tcattctcttactctaaatcatccatcaattctttaatgcatgagt 1187858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 3465573 - 3465503
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  3465573 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 3465503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 3468167 - 3468097
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  3468167 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 3468097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 28574397 - 28574327
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  28574397 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 28574327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 28598409 - 28598339
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  28598409 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 28598339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 13654433 - 13654365
Alignment:
Q  70 cattaacaacataattatccctcattctctt--actcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||| ||||||||||||||   ||| ||||||||||  ||||||||||| |||||||    
T  13654433 cattaacaacataattctccctcattctcttgctctctaaatcatccattaattctctaatgcatgagt 13654365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 18024252 - 18024320
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatga 134  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| || |||||||||||| |||||    
T  18024252 gttacattaacaacataattctccctcattctcttactctaaatcattcatcaattctctaatgcatga 18024320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 20891159 - 20891089
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    ||||||| |||||||||||| |||||||||| ||||||| |||||||||| |||||||||||| |||||||    
T  20891159 gttacataaacaacataattctccctcattcgcttactctaaatcatccatcaattctctaatgcatgagt 20891089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 3187561 - 3187628
Alignment:
Q  69 acattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    ||||||||||||||||| |||||||||||||||||| |||||||| | ||||||| |||| |||||||    
T  3187561 acattaacaacataattctccctcattctcttactctaaatcatctatcaattctttaatgcatgagt 3187628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 5458116 - 5458186
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | | ||||||| ||| || |||||||||| |||||||||||| |||||||    
T  5458116 gttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgagt 5458186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 5481592 - 5481662
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | | ||||||| ||| || |||||||||| |||||||||||| |||||||    
T  5481592 gttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgagt 5481662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 6858159 - 6858229
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | | ||||||| ||| || |||||||||| |||||||||||| |||||||    
T  6858159 gttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgagt 6858229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 8458411 - 8458341
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | | ||||||| ||| || |||||||||| |||||||||||| |||||||    
T  8458411 gttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgagt 8458341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 8464850 - 8464780
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | | ||||||| ||| || |||||||||| |||||||||||| |||||||    
T  8464850 gttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgagt 8464780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 29827520 - 29827454
Alignment:
Q  70 cattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||| ||| ||||| |||||||||||||||||| ||||||| || |||||||||||| |||||||    
T  29827520 cattaataacctaattctccctcattctcttactctaaatcattcatcaattctctaatgcatgagt 29827454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 49784592 - 49784526
Alignment:
Q  70 cattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    ||||||||||||||||  |||||||||| |||||  |||||||| | ||||||||||||||||||||    
T  49784592 cattaacaacataattccccctcattcttttactttaaatcatctatcaattctctaattcatgagt 49784526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 1302349 - 1302419
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  1302349 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 1302419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 4049907 - 4049837
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  4049907 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 4049837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 6853056 - 6853118
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaat 128  Q
    |||||||||||||||||||| | | ||||||| ||| || |||||||||| ||||||||||||    
T  6853056 gttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaat 6853118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 10584962 - 10585032
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    ||||||||||||||||||||   | ||||||| ||| || |||||||||| |||||||||||| |||||||    
T  10584962 gttacattaacaacataattcctcatcattctattattctaaatcatccatcaattctctaatgcatgagt 10585032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 10591399 - 10591469
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    ||||||||||||||||||||   | ||||||| ||| || |||||||||| |||||||||||| |||||||    
T  10591399 gttacattaacaacataattcctcatcattctattattctaaatcatccatcaattctctaatgcatgagt 10591469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 10673042 - 10673112
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  10673042 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 10673112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 10678157 - 10678227
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  10678157 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 10678227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 31076506 - 31076576
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  31076506 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 31076576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 31081611 - 31081681
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  31081611 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 31081681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 33702704 - 33702774
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  33702704 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 33702774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 33703399 - 33703329
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  33703399 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 33703329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 4055041 - 4054971
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| ||||||| |||| |||||||    
T  4055041 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctttaatgcatgagt 4054971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 4181490 - 4181556
Alignment:
Q  70 cattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||| ||||||||||||||| || |||||||||| |||||||||||| |||||||    
T  4181490 cattaacaacataattctccctcattctcttaatctaaatcatccatcaattctctaatgcatgagt 4181556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 14610464 - 14610394
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | | ||||||||||| || |||||||||| |||||||||||| |||||||    
T  14610464 gttacattaacaacataattcttcatcattctcttattctaaatcatccatcaattctctaatgcatgagt 14610394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 5440393 - 5440453
Alignment:
Q  67 ttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaa 127  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||||| | |||||||||||    
T  5440393 ttacattaacaacataattctccctcattcccttactctaaatcatcgatcaattctctaa 5440453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 5449403 - 5449463
Alignment:
Q  67 ttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaa 127  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||||| | |||||||||||    
T  5449403 ttacattaacaacataattctccctcattcccttactctaaatcatcgatcaattctctaa 5449463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 37459945 - 37460004
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctct 125  Q
    ||||||| |||||||||||| |||| ||||||||||||| |||||||||| |||||||||    
T  37459945 gttacatgaacaacataattctcccacattctcttactctaaatcatccatcaattctct 37460004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 12851774 - 12851704
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | | ||||||| ||| || |||||||||| |||||||||||| |||||||    
T  12851774 gttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgagt 12851704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 12856889 - 12856819
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  12856889 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 12856819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 26051121 - 26051051
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  26051121 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 26051051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 26056234 - 26056164
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  26056234 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 26056164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 26060480 - 26060410
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  26060480 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 26060410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 26065593 - 26065523
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  26065593 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 26065523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 11056720 - 11056655
Alignment:
Q  71 attaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    ||||||||||||||| |   |||||||||||||  |||||||||| ||||||| |||| |||||||    
T  11056720 attaacaacataattctttatcattctcttactttaaatcatccatcaattctttaatgcatgagt 11056655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 24508932 - 24509002
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| ||| ||||||| |||||| |||||||||| |||||||||||| |||||||    
T  24508932 gttacattaacaacataattctccatcattcttttactctaaatcatccatcaattctctaatgcatgagt 24509002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 2887586 - 2887520
Alignment:
Q  70 cattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    ||||| |||||||||| |||||||||||||||||| |||||||||| ||| |||||||| |||||||    
T  2887586 cattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagt 2887520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 21936784 - 21936854
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| ||| |||||||| ||||| |||||||| | |||||||||||| |||||||    
T  21936784 gttacattaacaacataattctccatcattctcatactctaaatcatctatcaattctctaatgcatgagt 21936854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 2889308 - 2889242
Alignment:
Q  70 cattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    ||||| |||||||||| |||||||||||||||||| ||||||| || ||| |||||||| |||||||    
T  2889308 cattaccaacataattctccctcattctcttactctaaatcattcatcaactctctaatgcatgagt 2889242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 11183270 - 11183340
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||| ||| ||||||||| || ||||||||||||||| |||||||| | |||||||||||| |||||||    
T  11183270 gttacaataataacataattctctctcattctcttactctaaatcatcaatcaattctctaatgcatgagt 11183340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 24509803 - 24509741
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaat 128  Q
    |||||||||||||||||||| ||| ||||||| |||||  |||||||||| ||||||||||||    
T  24509803 gttacattaacaacataattctccatcattcttttactttaaatcatccatcaattctctaat 24509741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 21275873 - 21275803
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  21275873 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 21275803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 21937668 - 21937600
Alignment:
Q  68 tacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||| ||| ||| ||||||| || ||| |||||| |||||||| ||| |||||||    
T  21937668 tacattaacaacataattttccatcactctcttattctaaaacatccatcaattctcaaatgcatgagt 21937600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 20752222 - 20752292
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  ||||||||||||  || ||||||| ||||||||| || |||||||    
T  20752222 gttacattaacaacataattcttcaccattctcttactataagtcatccatcaattctctgatgcatgagt 20752292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 716361 - 716297
Alignment:
Q  72 ttaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||| ||| |||||||||||||| |||||||||| |||||||||||| |||||||    
T  716361 ttaacaacataattctccttcattctcttactctaaatcatccatcaattctctaatgcatgagt 716297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 30283545 - 30283615
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| ||| || ||||||||||| |||||||| | |||||||||||| |||||||    
T  30283545 gttacattaacaacataattctccatccttctcttactctaaatcatcaatcaattctctaatgcatgagt 30283615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 14917486 - 14917556
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | | ||||||| ||| || |||||||||| |||||||||||| |||||||    
T  14917486 gttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgagt 14917556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 16284534 - 16284467
Alignment:
Q  70 cattaacaacataattatccctcattctcttactc-aaaatcatccaccaattctctaattcatgagt 136  Q
    ||||||||| |||||| |||||||||||||||||| |||||||| || ||| |||||||| |||||||    
T  16284534 cattaacaatataattctccctcattctcttactctaaaatcattcatcaactctctaatgcatgagt 16284467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 17720630 - 17720700
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  17720630 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 17720700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 45120486 - 45120416
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | | ||||||| ||| || |||||||||| |||||||| ||| |||||||    
T  45120486 gttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctccaatgcatgagt 45120416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 42780258 - 42780214
Alignment:
Q  92 cattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    ||||||||||||| |||||||||| |||||||||||| |||||||    
T  42780258 cattctcttactctaaatcatccatcaattctctaatgcatgagt 42780214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 13556409 - 13556479
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | | ||||||||||| || |||||||||| |||||||||||| |||||||    
T  13556409 gttacattaacaacataattcttcatcattctcttattctaaatcatccatcaattctctaatgcatgagt 13556479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 35369006 - 35369065
Alignment:
Q  77 aacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    ||||||||| | |||||||||||||||| |||||||||| |||||||||||| |||||||    
T  35369006 aacataattcttcctcattctcttactctaaatcatccatcaattctctaatgcatgagt 35369065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 43540854 - 43540925
Alignment:
Q  57 agaaattccgttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaat 128  Q
    |||||||  ||||||||||||||||| || ||| |||||||||||||| |||||||| | ||||||||||||    
T  43540854 agaaattttgttacattaacaacatagttctccatcattctcttactctaaatcatctatcaattctctaat 43540925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 2023064 - 2022994
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||||||| || |||||||||| |||||||||||| |||||||    
T  2023064 gttacattaacaacataattcttcaccattctcttattctaaatcatccatcaattctctaatgcatgagt 2022994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 4555753 - 4555683
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| |||||| ||||||||||  ||||||||||| |||||||    
T  4555753 gttacattaacaacataattcttcaccattctattactctaaatcatccattaattctctaatgcatgagt 4555683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 9877643 - 9877713
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  9877643 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 9877713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 39903945 - 39903875
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  39903945 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 39903875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 39909058 - 39908988
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |  |||||| ||| || |||||||||| |||||||||||| |||||||    
T  39909058 gttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagt 39908988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 9872528 - 9872598
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||||||| | |   ||||| ||| || |||||||||| |||||||||||| |||||||    
T  9872528 gttacattaacaacataattcttcacaattctattattctaaatcatccatcaattctctaatgcatgagt 9872598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 25184186 - 25184130
Alignment:
Q  72 ttaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaat 128  Q
    ||||||||||| || | |  ||||||||||||| |||||||||| ||||||||||||    
T  25184186 ttaacaacatatttcttcaccattctcttactctaaatcatccatcaattctctaat 25184130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 173458 - 173396
Alignment:
Q  66 gttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaat 128  Q
    ||||||| |||||||||||| | ||| |||||||||||| |||||||||| ||||||||||||    
T  173458 gttacatcaacaacataattcttcctaattctcttactctaaatcatccatcaattctctaat 173396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 2124 - 2193
Alignment:
Q  67 ttacattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 136  Q
    ||||||||||||||||||| | | ||||||| ||| || |||||||||| |||||||||||| |||||||    
T  2124 ttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgagt 2193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 144194 - 144126
Alignment:
Q  70 cattaacaacataattatccctcattctctt--actcaaaatcatccaccaattctctaattcatgagt 136  Q
    |||||||||||||||| ||||||||||||||   ||| ||||||||||  ||||||||||| |||||||    
T  144194 cattaacaacataattctccctcattctcttgctctctaaatcatccattaattctctaatgcatgagt 144126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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