View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_low_14 (Length: 406)
Name: NF1969_low_14
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 32 - 390
Target Start/End: Complemental strand, 47423164 - 47422795
Alignment:
| Q |
32 |
tgggacaagtaaacaaattcaaaaatatattttctcaccggctaattcactgattgcatgataaacatgatgt-----------------ttatactacc |
114 |
Q |
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| T |
47423164 |
tgggacaagtaaacaaattcaaaaatatattttctcaccggctaattcactgattgcatgataaacatgatgtatcattcttaatcatgtttatactacc |
47423065 |
T |
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| Q |
115 |
ccattggagaatcagaagactgagcttggggtggatcaattatttttcctgctgctgctgcttattatacaaacaactgagttgatgaaaataaggacaa |
214 |
Q |
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| T |
47423064 |
ccattggagaatcagaagactgagcttggggtggatcaattatttttcctgctgctg------attatacaaagaactgagttgatgaaaataaggacaa |
47422971 |
T |
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| Q |
215 |
gtcctagaatccattgaccttttcttcttattcacaacaatatcctttgtctttttaaaatacttatttatgttttcccatttttctttacacctctttg |
314 |
Q |
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| T |
47422970 |
gtcctagaatccattgaccttttcttcttattcacaacaatatcctttgtctttttaaaatacttatttatgttttcccatttttctttacacctctttg |
47422871 |
T |
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| Q |
315 |
cacttctcttgtatcccaactcaaacatcccttcagagattctctcccacaaaggtcccttattactatttccttc |
390 |
Q |
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| T |
47422870 |
cgcttctcttgtatcccaactcaaacatcccttcagagattctctcccacaaaggtcccttattactatttccttc |
47422795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 363
Target Start/End: Original strand, 36127406 - 36127513
Alignment:
| Q |
256 |
atcctttgtctttttaaaatacttatttatgttttcccatttttctttacacctctttgcacttctcttgtatcccaactcaaacatcccttcagagatt |
355 |
Q |
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| T |
36127406 |
atcctttgtttttctgaaatacttgttgatattctcccacttctctttgcatctctttgcacttctcttgtatcctaactccaacattccttgtgaaatt |
36127505 |
T |
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| Q |
356 |
ctctccca |
363 |
Q |
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| T |
36127506 |
ctctccca |
36127513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 12683339 - 12683295
Alignment:
| Q |
272 |
aaatacttatttatgttttcccatttttctttacacctctttgca |
316 |
Q |
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| T |
12683339 |
aaatacttgttaatgttttcccatttctctttgcacctctttgca |
12683295 |
T |
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