View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_low_19 (Length: 380)
Name: NF1969_low_19
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 134 - 365
Target Start/End: Complemental strand, 51386004 - 51385775
Alignment:
| Q |
134 |
atttgtgcctttttgtttcatcatccctcattctctttcaattttattccttatttataatcttcnnnnnnnnnnnngcaagagagtttctgcaacaaag |
233 |
Q |
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| T |
51386004 |
atttgtgcctttttgtttcatcatccctcattctctttcaattttattccttatttataatcttctttttcttttttgcaagag--tttctgcaacaaag |
51385907 |
T |
|
| Q |
234 |
catactacttaagttaataaggaggtttaagcagaggcactagacagtaggttgaatgtttctgattgtaaggaggcttttggtatctttgtatgttact |
333 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
51385906 |
catactgcttaagttaataaggaggtttaagcagaggcactgggcagtaggttgaatgtttctgattgtgaggaggcttttggtatctttgtatgttact |
51385807 |
T |
|
| Q |
334 |
tgcagaaatcaaggtaattgttgttcatatat |
365 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
51385806 |
tgcagaaatcaaggtaattgttgttcatatat |
51385775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 51386173 - 51386046
Alignment:
| Q |
8 |
gagcagagagagaaataattgcaatattttagagaggggtgctttttattaaggatattgaagaaaattcaccgtaatttgaagaaagaaacttttgcaa |
107 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
51386173 |
gagcaaagagagaaataattgcaatattttagagaggggtgctttttattaaggatattgaagaaaattcaccataatttgaagaaagaaacttttgcaa |
51386074 |
T |
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| Q |
108 |
acttatgcaatctgtacatttctgcaat |
135 |
Q |
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| T |
51386073 |
acttatgcaatctgtacatttctgcaat |
51386046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 11637246 - 11637144
Alignment:
| Q |
29 |
caatattttagagaggggtgctttttattaaggatattgaagaaaattcaccgtaatttgaagaaagaaacttttgcaaacttatgcaatctgtacattt |
128 |
Q |
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| T |
11637246 |
caatattttagagaggggtgctttctattaaggatattgaagaaa-ttcaccgtcatttgaagaaagaaacttttgcaaacatatgcaatttgtacattt |
11637148 |
T |
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| Q |
129 |
ctgc |
132 |
Q |
| |
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|||| |
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| T |
11637147 |
ctgc |
11637144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 359
Target Start/End: Complemental strand, 11637060 - 11636985
Alignment:
| Q |
282 |
aggttgaatgtttctgattgtaaggaggcttttggtatctttgtatgttacttgcagaaatcaaggtaattgttgttc |
359 |
Q |
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||||||||||||| |||||| | | |||||||||||||||||||||||| ||| | ||||||||||||||||||||| |
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| T |
11637060 |
aggttgaatgtttgtgattgga--gtggcttttggtatctttgtatgttatttgtacaaatcaaggtaattgttgttc |
11636985 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 11637100 - 11637060
Alignment:
| Q |
133 |
aatttgtgcctttttgtttcatcatccctcattctctttca |
173 |
Q |
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||||||| || |||||||||||||||||||||||||||||| |
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| T |
11637100 |
aatttgtacccttttgtttcatcatccctcattctctttca |
11637060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 15995823 - 15995774
Alignment:
| Q |
146 |
ttgtttcatcatccctcattctctttcaattttattccttatttataatctt |
197 |
Q |
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||||||||||||||||||| | |||||||||| ||||||||||||||||| |
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| T |
15995823 |
ttgtttcatcatccctcataat--ttcaattttaatccttatttataatctt |
15995774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 38951704 - 38951655
Alignment:
| Q |
146 |
ttgtttcatcatccctcattctctttcaattttattccttatttataatctt |
197 |
Q |
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||||||||||||||||||| | |||||||||| ||||||||||||||||| |
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| T |
38951704 |
ttgtttcatcatccctcataat--ttcaattttaatccttatttataatctt |
38951655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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