View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_low_2 (Length: 756)
Name: NF1969_low_2
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 696; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 17 - 743
Target Start/End: Original strand, 53617936 - 53618665
Alignment:
| Q |
17 |
atgttgtaaaattaagaacaactaaaaacagtttctgattttttctagcattgatgttgagtgtcatgtcaataatatgtaagtagagtttct---atac |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
53617936 |
atgttgtaaaattaagaacaactaaaaacagtttctgattttttctagcattgatgttgagcgtcatgtcaataatatgtaagtagagtttcttctatac |
53618035 |
T |
|
| Q |
114 |
taggacatgttcataagacaaatagtggtaaactgtgggaccctttaaggtacattagaacgcaagtattatttttgtattggagtaaacataggtgaat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
53618036 |
taggacatgttcataagacaaatagtggtaaactgtgggaccctttaaggtacattagaacgcaaatattatttttgtattggagtaaacataggtgaat |
53618135 |
T |
|
| Q |
214 |
gttcttaaatcacatgtgaaaacttggggcccagtaaaagtaacttaataacatcaaacattgttctctaatctacttgctccggagatactctaatgag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53618136 |
gttcttaaatcacatgtgaaaacttggggcccagtaaaagtaacttaataacatcaaacattgttctctaatctacttgctccggagatactctaatgag |
53618235 |
T |
|
| Q |
314 |
tccacactcagctattgtcatcttcattttacattaacttttactgttaatggattttatacatacaagttacttgaacagagttactggtttgtccgtt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53618236 |
tccacactcagctattgtcatcttcattttacattaacttttactgttgatggattttatacatacaagttacttgaacagagttactggtttgtccgtt |
53618335 |
T |
|
| Q |
414 |
tgggcatatttactctgtttggcttgctgccaagtttcatttggtgtttgttgagccttttccgaaccttactagttaataattttgttgcagaatggaa |
513 |
Q |
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| T |
53618336 |
tgggcatatttactctgtttggcttgctgccaagtttcatttggtgtttgttgagccttttccgaaccttactagttaataattttgttgcagaatggaa |
53618435 |
T |
|
| Q |
514 |
taatgcaaactcacgatgaagaaactcgaaagtttttcaagcattcttcagtttcatgtgtgttgtcacctcgatatgccagcagtaagcttagcatttt |
613 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53618436 |
taatgcaaactcatgatgaagaaactcgaaagtttttcaagcattcttcagtttcatgtgtgttgtcacctcgatatgccagcagtaagcttagcatttt |
53618535 |
T |
|
| Q |
614 |
caagcagcaggcatgctttatgctatggtttagtagctttcctagactgttttatgtttcttttaagaagttatgcatactatttcattatttccattct |
713 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53618536 |
caagcagcaggcatgctttatgctatggtttagtagctttcctagacttttttatgtttcttttaagaagttatgcatactatttcattatttccattct |
53618635 |
T |
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| Q |
714 |
ttcattacatcactctagttttaatatatt |
743 |
Q |
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| T |
53618636 |
ttcattacatcactctagttttaatatatt |
53618665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 56 - 279
Target Start/End: Original strand, 14344571 - 14344796
Alignment:
| Q |
56 |
tttttctagcattgatgttgagtgtcatgtcaataatatgtaagtagagtttctatactaggacatgttcataagacaaatagtggtaaactgtgggacc |
155 |
Q |
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|||||||||||||||||| ||||| |||| ||||||||||||||||||||||| || || |||||||| || || |||||| | ||||||||| |
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| T |
14344571 |
tttttctagcattgatgtcgagtggcatggcaataatatgtaagtagagtttccat--gagtacatgttcttacactgaaaagtggtgagttgtgggacc |
14344668 |
T |
|
| Q |
156 |
ctttaaggtacatt-agaacgcaagtattatttttgtattggag---taaacataggtgaatgttcttaaatcacatgtgaaaacttggggcccagtaaa |
251 |
Q |
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| || | ||| ||| ||||| ||| || ||||||| ||||||| |||| |||||||||||||||||||| ||| || |||||||||||||| |||| |
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| T |
14344669 |
ccttgaagtaaattcagaacacaactacgatttttgcattggagtaataaaaataggtgaatgttcttaaataacacatggaaacttggggcccactaaa |
14344768 |
T |
|
| Q |
252 |
agtaacttaataacatcaaacattgttc |
279 |
Q |
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||||||| || ||||| || |||||||| |
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| T |
14344769 |
agtaactcaagaacataaagcattgttc |
14344796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 50422409 - 50422340
Alignment:
| Q |
32 |
gaacaactaaaaacagtttctgattttttctagcattgatgttgagtgtcatgtcaataatatgtaagta |
101 |
Q |
| |
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||||||||||| ||||| |||||| ||||||||||| ||||||| |||| |||||||||||||||| |
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| T |
50422409 |
gaacaactaaaggtagtttttgatttgttctagcattggagttgagtagcatggcaataatatgtaagta |
50422340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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