View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_low_22 (Length: 374)
Name: NF1969_low_22
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 14 - 363
Target Start/End: Complemental strand, 25990870 - 25990521
Alignment:
| Q |
14 |
aatataataaatccaattccttcttgtgtatttgagtcatgaaaaccaaaacctttc-accattcatgccatcaatgggcacactaccatctctatattt |
112 |
Q |
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| T |
25990870 |
aatataatacatccaattccttcttgtgtatttgagtcatgaaaaccaaaacctttccaccattcatgccatcaatgggcacactaccctctctatattt |
25990771 |
T |
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| Q |
113 |
taatgacaccctcatctattaaactattgtaaaaatgaaaagaaaataagatatgttgtattaaatttctagttgaacagaaattaaaatcaattatttc |
212 |
Q |
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| T |
25990770 |
taatgccaccctcatctattaaactattgtaaaaatgaaaagaaaataagatatgttgtattaaacttctagttgaacagaaatt--aatcaattatttc |
25990673 |
T |
|
| Q |
213 |
gtatttgacttttcgaaagtaatatgtcaatgtcaaatattcctcttgctttgaaaactacttcattttgagaggaatgattagttaattagtttatata |
312 |
Q |
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| T |
25990672 |
gtatttgacttttcaaaagcaacatgtcaatgtcaaatattcctcttgctttgaaaacta-ttcattttgagaggaatgattagttaattagtttatata |
25990574 |
T |
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| Q |
313 |
tccctgtgtcaagctataaataa--accataatacacacaaattaccattctt |
363 |
Q |
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| T |
25990573 |
tccctgtgccaagctataaataaacaccttaatacacacaaattaccattctt |
25990521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 233 - 312
Target Start/End: Original strand, 25323293 - 25323371
Alignment:
| Q |
233 |
aatatgtcaatgtcaaatattcctcttgctttgaaaactacttcattttgagaggaatgattagttaattagtttatata |
312 |
Q |
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| T |
25323293 |
aatatgtcaatgtcaaacattcctcttactttgaaaacta-ttcattttgagagcaatgattggttaattagtttatata |
25323371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 233 - 312
Target Start/End: Original strand, 26152986 - 26153064
Alignment:
| Q |
233 |
aatatgtcaatgtcaaatattcctcttgctttgaaaactacttcattttgagaggaatgattagttaattagtttatata |
312 |
Q |
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||||||||||||||||| ||||||||| |||||||||||| ||||||||||||| ||||||| ||||||||||||||||| |
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| T |
26152986 |
aatatgtcaatgtcaaacattcctcttactttgaaaacta-ttcattttgagagcaatgattggttaattagtttatata |
26153064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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