View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_low_23 (Length: 365)
Name: NF1969_low_23
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 337
Target Start/End: Original strand, 31858650 - 31858979
Alignment:
| Q |
8 |
agataattctgccaagaggttacgtagacttctactatttaccaatcgggcaaccttgaacctgtaccatctgaacctcttcatattgctatttgccgcc |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31858650 |
agattattctgccaagaggttacgtagacttctactatttaccaatcggacaaccttgaacctgtaccatctgaacctcttcatattgctattggccgcc |
31858749 |
T |
|
| Q |
108 |
tcggtcatatatcgcagaaaaatatataacataaataaaggtacattgataaagaaataattaatttgcattaaaatttaaaaggggtttttataaaagg |
207 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
31858750 |
tcggtcatatatcgcagaaaaatatataagataaataaaggtacattgataaagaaataattaattcgcattaaaatttaaaagggctttttataaaagg |
31858849 |
T |
|
| Q |
208 |
acnnnnnnnncttaaaaatatctaataattagagacggaagtagtagtactttataaataaataaataataattttattatcgcattaaattgataaagc |
307 |
Q |
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| T |
31858850 |
acaaaaaaaacttaaaaatatctaataattagagacggaagtagtagtactttataaataaataaataaaaattgtattatcgcattaaattgataaagt |
31858949 |
T |
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| Q |
308 |
ccttcagatgactttgactttatcaacatt |
337 |
Q |
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| T |
31858950 |
ccttcatatgactttgactttatcaacatt |
31858979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 27725598 - 27725646
Alignment:
| Q |
124 |
gaaaaatatataacataaataaaggtacattgataaagaaataattaat |
172 |
Q |
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| T |
27725598 |
gaaaaagatgtaaaataaataagggtagattgataaagaaataattaat |
27725646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 16292343 - 16292424
Alignment:
| Q |
33 |
agacttctactatttaccaatcgggcaaccttgaacctgtaccatctgaacctcttcatattgctatttgccgcctcggtca |
114 |
Q |
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| T |
16292343 |
agacttctactatttaccaattgggcaaccttaaacctataccattcgaacttcttcatattgttattggccaccttggtca |
16292424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 24023720 - 24023780
Alignment:
| Q |
112 |
tcatatatcgcagaaaaatatataacataaataaaggtacattgataaagaaataattaat |
172 |
Q |
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|||||||| |||||||| |||||||||||||||| ||| ||| |||||||||||||||| |
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| T |
24023720 |
tcatatattgcagaaaattatataacataaataagagtatattagtaaagaaataattaat |
24023780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 29999921 - 29999853
Alignment:
| Q |
125 |
aaaaatatataacataaataaaggtacattgataaagaaataattaatttgcattaaaatttaaaaggg |
193 |
Q |
| |
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|||||||| ||||||||||| | || ||||||||||||||||||||| | ||||||||||| |||||| |
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| T |
29999921 |
aaaaatatgcaacataaataaggatatattgataaagaaataattaatctacattaaaatttgaaaggg |
29999853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 27163352 - 27163404
Alignment:
| Q |
121 |
gcagaaaaatatataacataaataaaggtacattgat-aaagaaataattaat |
172 |
Q |
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|||||||||||| ||||||||||| ||||| |||||| ||||||||||||||| |
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| T |
27163352 |
gcagaaaaatatgtaacataaatacaggtatattgataaaagaaataattaat |
27163404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 424711 - 424769
Alignment:
| Q |
114 |
atatatcgcagaaaaatatataacataaataaaggtacattgataaagaaataattaat |
172 |
Q |
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|||||| | |||||||||| ||||||||| | |||| ||||||||||||||||||||| |
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| T |
424711 |
atatattgtagaaaaatatgtaacataaacatgggtatattgataaagaaataattaat |
424769 |
T |
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