View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_low_24 (Length: 362)
Name: NF1969_low_24
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 28382144 - 28382215
Alignment:
| Q |
3 |
ttcaacaaatacatgacacacagaaggattaatgacagaaaatttgaagcgataagtgtagtgtaagatccc |
74 |
Q |
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| T |
28382144 |
ttcaacaaatacatgacacacagaaggattaatgacagaaaatttgaagcgataggtgtagtgtaagatccc |
28382215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 28382286 - 28382377
Alignment:
| Q |
145 |
gtatgatttattgagtgatgatattatttttcttttaatnnnnnnntattttcaaattgattttatttactatgtggtcaaatcatcgttcc |
236 |
Q |
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| T |
28382286 |
gtatgatttattgagtgatgatattatttctcttttaataaaaaaatattttcaaattgattttatttactatgtgatcaaatcatcgttcc |
28382377 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 28386754 - 28386845
Alignment:
| Q |
145 |
gtatgatttattgagtgatgatattatttttcttttaatnnnnnnntattttcaaattgattttatttactatgtggtcaaatcatcgttcc |
236 |
Q |
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| T |
28386754 |
gtatgatttattgagtgatgatattatttctctcttaataaaaaaatattttcaaattgattttatttactatgtgatcaaatcatcgttcc |
28386845 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 28657895 - 28657858
Alignment:
| Q |
145 |
gtatgatttattgagtgatgatattatttttcttttaa |
182 |
Q |
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| T |
28657895 |
gtatgatttattgagtgatgatattatttctcttttaa |
28657858 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 2037642 - 2037681
Alignment:
| Q |
143 |
cagtatgatttattgagtgatgatattatttttcttttaa |
182 |
Q |
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| T |
2037642 |
cagtatgatttattgagtgatgatattatttctctcttaa |
2037681 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 173
Target Start/End: Original strand, 21508132 - 21508162
Alignment:
| Q |
143 |
cagtatgatttattgagtgatgatattattt |
173 |
Q |
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| T |
21508132 |
cagtatgatttattgagtgatgatattattt |
21508162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 173
Target Start/End: Complemental strand, 34519177 - 34519149
Alignment:
| Q |
145 |
gtatgatttattgagtgatgatattattt |
173 |
Q |
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| T |
34519177 |
gtatgatttattgagtgatgatattattt |
34519149 |
T |
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