View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_low_26 (Length: 359)
Name: NF1969_low_26
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 3 - 197
Target Start/End: Complemental strand, 602621 - 602427
Alignment:
| Q |
3 |
cgtgacgtattcggtatcggtgtatatacccgtgcttcataggtcgtggtcttctttatactaaaacaataatttgnnnnnnnnagagaaggacaaattt |
102 |
Q |
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| T |
602621 |
cgtgtcgtatttggtatcggtgtatgtgcccgtgcttcataggtggtcttcttctttattctagaacaataatttggtttttttagggaaggacaaattt |
602522 |
T |
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| Q |
103 |
agctattagtggccaacttttaagaaaaacaggaaaaattaatatataaattgagtttaatttcatcaaggtcagtctaatacatatataggcct |
197 |
Q |
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| T |
602521 |
agttattagtggccaacttttaagaaaaacaggaaaaattaatatataaattgagtttaatttcatcaaggtcagtctaatacatttataggcct |
602427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 602367 - 602279
Alignment:
| Q |
256 |
gtttgaaattagatagattagagcttgcaatcccaaggcattactagggtttgcatccgaacctaattaaccaactgagctacataaat |
344 |
Q |
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| T |
602367 |
gtttgaaattagatagattagagcttgcaatcccaaggcattactagggtttgcatccgaacctaattgaccaactgagctgcataaat |
602279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 90 - 185
Target Start/End: Complemental strand, 805336 - 805242
Alignment:
| Q |
90 |
gaaggacaaatttagctattagtggccaacttttaagaaaaacaggaaaaattaatatataaattgagtttaatttcatcaaggtcagtctaatac |
185 |
Q |
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| T |
805336 |
gaaggacaaatttagttattagtggccaatttttaagaaaaagagggaaa-ttagtatatatattgagtttaatttcatcaaggtcactctaatac |
805242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 805151 - 805094
Alignment:
| Q |
286 |
tcccaaggcattactagggtttgcatccgaacctaattaaccaactgagctacataaa |
343 |
Q |
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| T |
805151 |
tcccaaggcattactagggtttgcatccgaaactaattaacaaactgagctgcataaa |
805094 |
T |
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