View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1969_low_27 (Length: 356)
Name: NF1969_low_27
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 340
Target Start/End: Original strand, 8593296 - 8593616
Alignment:
| Q |
6 |
aggagcagagagagtgttgaggtatgttaagggaaccttatattttggcattaagttatgtcgatcggaaaatttcaagttacgaggttactcagatagt |
105 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8593296 |
aggagcaaagagagtgttgaggtatgttaagggaaccttaaattttggcattaagttatgtcgatcggaaaatttcaagttacgaggttactcagatagt |
8593395 |
T |
|
| Q |
106 |
gattgggtcggatctttagatgacatgaaaagcacttcaggctactgttttagttatggaacagggatattctcgtggagttnnnnnnnnn-caa-atat |
203 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
8593396 |
gattggg---------------acatgaaaagcacttcaggctactgttttagttatggaacagggatattctcgtggagttaaaaaaaaaacaagatat |
8593480 |
T |
|
| Q |
204 |
tgttgcacaatcaacagctgaagcagagttcattgcagccacaaaagctgttaatcagccattgtggctaagaaaagttctaactgatttgcacttagaa |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8593481 |
ggttgcacaatcaacagctgaagcagagttc-ttgcagccacaacagctgttaatcaggcattgtggctaagaaaagttctaactgatttgcacttagag |
8593579 |
T |
|
| Q |
304 |
caaagggaaactactgaggtaatggtggacaaccatg |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8593580 |
caaagggaaactactgaggtaatggtggacaaccatg |
8593616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 338
Target Start/End: Original strand, 29871150 - 29871482
Alignment:
| Q |
6 |
aggagcagagagagtgttgaggtatgttaagggaaccttatattttggcattaagttatgtcgatcggaaaatttcaagttacgaggttactcagatagt |
105 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||||||||| ||| |||||||||||| |||||||||||||| |||||||| | ||||||||| |||||| |
|
|
| T |
29871150 |
aggagcaaaaagagtgttgaggtatgtcaagggaaccttaaattatggcattaagttctgtcgatcggaaaaattcaagttgcaaggttactctgatagt |
29871249 |
T |
|
| Q |
106 |
gattgggtcggatctttagatgacatgaaaagcacttcaggctactgttttagttatggaacagggatattctcgtggagttnnnnnnnnncaaatattg |
205 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| | | |||| |
|
|
| T |
29871250 |
gattgggcaggatctttagatgacatgaaaagcacttcaggctactgttttagttctgggacagggatattctcttggagttcaaaaaaacaagaaattg |
29871349 |
T |
|
| Q |
206 |
ttgcacaatcaacagctgaagcagagttcattgcagccacaaaagctgttaatcagccattgtggctaagaaaagttctaactgatttgcacttagaaca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| || ||||| || |
|
|
| T |
29871350 |
ttgcacaatcaacagctgaagcagagtttattgcagccacagcagctgttaatcaggccttgtggctaagaaaagttctaactgatttacatttagagca |
29871449 |
T |
|
| Q |
306 |
aagggaaactactgaggtaatggtggacaacca |
338 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |
|
|
| T |
29871450 |
aaaggaaactactgaggtaatggtggacaacca |
29871482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 338
Target Start/End: Original strand, 26054329 - 26054661
Alignment:
| Q |
6 |
aggagcagagagagtgttgaggtatgttaagggaaccttatattttggcattaagttatgtcgatcggaaaatttcaagttacgaggttactcagatagt |
105 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||||||||| ||| |||||||||||| |||||||||||||| |||||||| | ||||||||| |||||| |
|
|
| T |
26054329 |
aggagcaaaaagagtgttgaggtatgtcaagggaaccttaaattatggcattaagttctgtcgatcggaaaaattcaagttgcaaggttactctgatagt |
26054428 |
T |
|
| Q |
106 |
gattgggtcggatctttagatgacatgaaaagcacttcaggctactgttttagttatggaacagggatattctcgtggagttnnnnnnnnncaaatattg |
205 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| | | |||| |
|
|
| T |
26054429 |
gattgggcaggatctttagatgacatgaaaagcacttcaggctactgttttagttctgggacagggatattctcttggagttcaaaaaaacaagaaattg |
26054528 |
T |
|
| Q |
206 |
ttgcacaatcaacagctgaagcagagttcattgcagccacaaaagctgttaatcagccattgtggctaagaaaagttctaactgatttgcacttagaaca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26054529 |
ttgcacaatcaacagctgaagcagagtttattgcagccacagcagctgttaatcaggccttgtggctaagaaaagttctaactgatttgcacttagagca |
26054628 |
T |
|
| Q |
306 |
aagggaaactactgaggtaatggtggacaacca |
338 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||| |
|
|
| T |
26054629 |
aaaggaaactactgaggtaatggtgaacaacca |
26054661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 338
Target Start/End: Original strand, 26074382 - 26074714
Alignment:
| Q |
6 |
aggagcagagagagtgttgaggtatgttaagggaaccttatattttggcattaagttatgtcgatcggaaaatttcaagttacgaggttactcagatagt |
105 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||||||||| ||| |||||||||||| |||||||||||||| |||||||| | ||||||||| |||||| |
|
|
| T |
26074382 |
aggagcaaaaagagtgttgaggtatgtcaagggaaccttaaattatggcattaagttctgtcgatcggaaaaattcaagttgcaaggttactctgatagt |
26074481 |
T |
|
| Q |
106 |
gattgggtcggatctttagatgacatgaaaagcacttcaggctactgttttagttatggaacagggatattctcgtggagttnnnnnnnnncaaatattg |
205 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| ||||||| | | |||| |
|
|
| T |
26074482 |
gattgggcaggatctttagatgacatgaaaagcacttcaggctactgttttagttctgggatagggatattctcttggagttcaaaaaaacaagaaattg |
26074581 |
T |
|
| Q |
206 |
ttgcacaatcaacagctgaagcagagttcattgcagccacaaaagctgttaatcagccattgtggctaagaaaagttctaactgatttgcacttagaaca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26074582 |
ttgcacaatcaacagctgaagcagagtttattgcagccacagcagctgttaatcaggccttgtggctaagaaaagttctaactgatttgcacttagagca |
26074681 |
T |
|
| Q |
306 |
aagggaaactactgaggtaatggtggacaacca |
338 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||| |
|
|
| T |
26074682 |
aaaggaaactactgaggtaatggtgaacaacca |
26074714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 338
Target Start/End: Original strand, 19968469 - 19968801
Alignment:
| Q |
6 |
aggagcagagagagtgttgaggtatgttaagggaaccttatattttggcattaagttatgtcgatcggaaaatttcaagttacgaggttactcagatagt |
105 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||||||||| ||| |||||||||||| |||||||||||||| |||||||| | ||||||||| |||||| |
|
|
| T |
19968469 |
aggagcaaaaagagtgttgaggtatgtcaagggaaccttaaattatggcattaagttctgtcgatcggaaaaattcaagttgcaaggttactccgatagt |
19968568 |
T |
|
| Q |
106 |
gattgggtcggatctttagatgacatgaaaagcacttcaggctactgttttagttatggaacagggatattctcgtggagttnnnnnnnnncaaatattg |
205 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| | | |||| |
|
|
| T |
19968569 |
gattgggcaggatctttagatgacatgaaaagcacttcaggctactgttttagttctgggacagggatattctcttggagttcaaaaaaacaagaaattg |
19968668 |
T |
|
| Q |
206 |
ttgcacaatcaacagctgaagcagagttcattgcagccacaaaagctgttaatcagccattgtggctaagaaaagttctaactgatttgcacttagaaca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| || ||||| || |
|
|
| T |
19968669 |
ttgcacaatcaacagctgaagcagagtttattgcagccacagcagctgttaatcaggccttgtggctaagaaaagttctaactgatttacatttagagca |
19968768 |
T |
|
| Q |
306 |
aagggaaactactgaggtaatggtggacaacca |
338 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |
|
|
| T |
19968769 |
aaaggaaactactgaggtaatggtggacaacca |
19968801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 338
Target Start/End: Complemental strand, 21024340 - 21024008
Alignment:
| Q |
6 |
aggagcagagagagtgttgaggtatgttaagggaaccttatattttggcattaagttatgtcgatcggaaaatttcaagttacgaggttactcagatagt |
105 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||||||||| ||| |||||||||||| |||||||||||||| |||||||| | ||||||||| |||||| |
|
|
| T |
21024340 |
aggagcaaaaagagtgttgaggtatgtcaagggaaccttaaattatggcattaagttctgtcgatcggaaaaattcaagttgcaaggttactctgatagt |
21024241 |
T |
|
| Q |
106 |
gattgggtcggatctttagatgacatgaaaagcacttcaggctactgttttagttatggaacagggatattctcgtggagttnnnnnnnnncaaatattg |
205 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| | | |||| |
|
|
| T |
21024240 |
gattgggcaggatctttagatgacatgaaaagcacttcaggctactgttttagttctgggacagggatattctcttggagttcaaaaaaacaagaaattg |
21024141 |
T |
|
| Q |
206 |
ttgcacaatcaacagctgaagcagagttcattgcagccacaaaagctgttaatcagccattgtggctaagaaaagttctaactgatttgcacttagaaca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| || ||||| || |
|
|
| T |
21024140 |
ttgcacaatcaacagctgaagcagagtttattgcagccacagcagctgttaatcaggccttgtggctaagaaaagttctaactgatttacatttagagca |
21024041 |
T |
|
| Q |
306 |
aagggaaactactgaggtaatggtggacaacca |
338 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |
|
|
| T |
21024040 |
aaaggaaactactgaggtaatggtggacaacca |
21024008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 6367630 - 6367471
Alignment:
| Q |
16 |
agagtgttgaggtatgttaagggaaccttatattttggcattaagttatgtcgatcggaaaatttcaagttacgaggttactcagatagtgattgggtcg |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||| |||||||||||| | ||||| | ||| ||||||||| | ||||||||| |||||||||||||| |
|
|
| T |
6367630 |
agagtgttgaggtatgtcaagggaaccttaaattatggcattaagttctatcgatggaaaattttcaagttgcaaggttactctgatagtgattgggtac |
6367531 |
T |
|
| Q |
116 |
gatctttagatgacatgaaaagcacttcaggctactgttttagttatggaacagggatat |
175 |
Q |
| |
|
|||||||||||||||| |||| || || || |||||||||||||| |||||||||||||| |
|
|
| T |
6367530 |
gatctttagatgacataaaaaacagtttagactactgttttagttctggaacagggatat |
6367471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 338
Target Start/End: Complemental strand, 20783159 - 20782827
Alignment:
| Q |
6 |
aggagcagagagagtgttgaggtatgttaagggaaccttatattttggcattaagttatgtcgatcggaaaatttcaagttacgaggttactcagatagt |
105 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||||||||| ||| |||||||||||| |||||||||||||| |||||||| | ||||||||| |||||| |
|
|
| T |
20783159 |
aggagcaaaaagagtgttgaggtatgtcaagggaaccttaaattatggcattaagttctgtcgatcggaaaaattcaagttgcaaggttactctgatagt |
20783060 |
T |
|
| Q |
106 |
gattgggtcggatctttagatgacatgaaaagcacttcaggctactgttttagttatggaacagggatattctcgtggagttnnnnnnnnncaaatattg |
205 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| | | |||| |
|
|
| T |
20783059 |
gattgggcaggatctttagatgacatgaaaagcacttcaggctactgttttagttctgggacagggatattctcttggagttcaaaaaaacaagaaattg |
20782960 |
T |
|
| Q |
206 |
ttgcacaatcaacagctgaagcagagttcattgcagccacaaaagctgttaatcagccattgtggctaagaaaagttctaactgatttgcacttagaaca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| || ||||| || |
|
|
| T |
20782959 |
ttgcacaatcaacagctgaagcagagtttattgcagccacagcagctgttaatcaggccttgtggctaagaaaagttctaactgatttacatttagagca |
20782860 |
T |
|
| Q |
306 |
aagggaaactactgaggtaatggtggacaacca |
338 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |
|
|
| T |
20782859 |
aaaggaaactactgaggtaatggtggacaacca |
20782827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 338
Target Start/End: Original strand, 29472713 - 29473045
Alignment:
| Q |
6 |
aggagcagagagagtgttgaggtatgttaagggaaccttatattttggcattaagttatgtcgatcggaaaatttcaagttacgaggttactcagatagt |
105 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||||||||| ||| |||||||||||| |||||||||||||| |||||||| | ||||||||| |||||| |
|
|
| T |
29472713 |
aggagcaaaaagagtgttgaggtatgtcaagggaaccttaaattatggcattaagttctgtcgatcggaaaaattcaagttgcaaggttactctgatagt |
29472812 |
T |
|
| Q |
106 |
gattgggtcggatctttagatgacatgaaaagcacttcaggctactgttttagttatggaacagggatattctcgtggagttnnnnnnnnncaaatattg |
205 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| | | |||| |
|
|
| T |
29472813 |
gattgggcaggatctttagatgacatgaaaagcacttcaggctactgttttagttctgggacagggatattctcttggagttcaaaaaaacaagaaattg |
29472912 |
T |
|
| Q |
206 |
ttgcacaatcaacagctgaagcagagttcattgcagccacaaaagctgttaatcagccattgtggctaagaaaagttctaactgatttgcacttagaaca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| || ||||| || |
|
|
| T |
29472913 |
ttgcacaatcaacagctgaagcagagtttattgcagccacagcagctgttaatcaggccttgtggctaagaaaagttctaactgatttacatttagagca |
29473012 |
T |
|
| Q |
306 |
aagggaaactactgaggtaatggtggacaacca |
338 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |
|
|
| T |
29473013 |
aaaggaaactactgaggtaatggtggacaacca |
29473045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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