View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_low_29 (Length: 354)
Name: NF1969_low_29
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 344
Target Start/End: Original strand, 41000383 - 41000706
Alignment:
| Q |
18 |
aaatagaggctatatatatgtgattgtgaagtgactactgttcaaaaaacacaaagcatgcataaaaatgtttctaattattattattatacctcttgta |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41000383 |
aaatagaggctaaatatatgtgattgtgaagtgactactgttcaaaaaacacaaagcatgcataaaaatgtttctaatta---ttattatacctcttgta |
41000479 |
T |
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| Q |
118 |
caaggtcatcccaagcatcctgaaagtgggtcccaaaaagaactccagcaccaccttgttctgtggggtccactgaagttctgcctaagcaaactaagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41000480 |
caaggtcatcccaagcatcctgaaagtgggtcccaaaaagaactccagcaccaccttgttctgtggggtccactgaagttctgcctaagcaaactaagaa |
41000579 |
T |
|
| Q |
218 |
catggacccctctctcttcatttccactgaccttgcactcaagaagcttgccaaatctgttttgaactgtctcttgtaggcattggctgtgctctcatta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41000580 |
catggacccctctctcttcatttccactgaccttgcactcaagaagcttgccaaatctgttttgaactgtctcttgtaggcattggctgtgctctcatta |
41000679 |
T |
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| Q |
318 |
gcaccatgaataaacaccttccctttg |
344 |
Q |
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| T |
41000680 |
gcaccatgaataaacaccttccctttg |
41000706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 344
Target Start/End: Original strand, 20852722 - 20853045
Alignment:
| Q |
18 |
aaatagaggctatatatatgtgattgtgaagtgactactgttcaaaaaacacaaagcatgcataaaaatgtttctaattattattattatacctcttgta |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20852722 |
aaatagaggctaaatatatgtgattgtgaagtgactactgttcaaaaaacacaaagcatgcataaaaatgtttctaatta---ttattatacctcttgta |
20852818 |
T |
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| Q |
118 |
caaggtcatcccaagcatcctgaaagtgggtcccaaaaagaactccagcaccaccttgttctgtggggtccactgaagttctgcctaagcaaactaagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20852819 |
caaggtcatcccaagcatcctgaaagtgggtcccaaaaagaactccagcaccaccttgttctgtggggtccactgaagttctgcctaagcaaactaagaa |
20852918 |
T |
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| Q |
218 |
catggacccctctctcttcatttccactgaccttgcactcaagaagcttgccaaatctgttttgaactgtctcttgtaggcattggctgtgctctcatta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20852919 |
catggacccctctctcttcatttccactgaccttgcactcaagaagcttgccaaatctgttttgaactgtctcttgtaggcattggctgtgctctcatta |
20853018 |
T |
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| Q |
318 |
gcaccatgaataaacaccttccctttg |
344 |
Q |
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||||||||||||||||||||||||||| |
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| T |
20853019 |
gcaccatgaataaacaccttccctttg |
20853045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 107 - 228
Target Start/End: Original strand, 21556765 - 21556886
Alignment:
| Q |
107 |
tacctcttgtacaaggtcatcccaagcatcctgaaagtgggtcccaaaaagaactccagcaccaccttgttctgtggggtccactgaagttctgcctaag |
206 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||||| || | ||||| |||||||| || || ||||||||||||||||||||||| |
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| T |
21556765 |
tacctcttggacaagatcatcccaagcatcctgaaagtgggtcccaaagaggagaccagccccaccttggtcagtagggtccactgaagttctgcctaaa |
21556864 |
T |
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| Q |
207 |
caaactaagaacatggacccct |
228 |
Q |
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||||| |||||||||||||||| |
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| T |
21556865 |
caaaccaagaacatggacccct |
21556886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 37128925 - 37129008
Alignment:
| Q |
212 |
taagaacatggacccctctctcttcatttccactgaccttgcactcaagaagc-ttgccaaatctgttttgaactgtctcttgt |
294 |
Q |
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| T |
37128925 |
taagaacatggatccctctctcttcatttccattgaccttgcacccaagaagctttgccaaatctgttttgaattgtctcttgt |
37129008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 37128844 - 37128805
Alignment:
| Q |
32 |
tatatgtgattgtgaagtgactactgttcaaaaaacacaa |
71 |
Q |
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| T |
37128844 |
tatatgtgattgtgaaatgactactgttcaaaaaacacaa |
37128805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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