View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1969_low_3 (Length: 731)
Name: NF1969_low_3
Description: NF1969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1969_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 10 - 567
Target Start/End: Complemental strand, 15180153 - 15179596
Alignment:
| Q |
10 |
agtgagatgaaagactttaccaaatacaattgccacatccgttatggttagatcttccactaacatctatgacttgggtataactttaaaatttcacaaa |
109 |
Q |
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| T |
15180153 |
agtgacatgaaagactttaccaaatacaattgccacatccgatatggttagaccttccactaacatctatgacttgggtataacttcaaaatttcacaac |
15180054 |
T |
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| Q |
110 |
tcgtaaattacacgtaaatagaagataaataaaataagtcaaaccttgaaattaaagcaagtatgaaggtaaaagctgggagaaggtcaagcatagcaga |
209 |
Q |
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| T |
15180053 |
tcgtaaattacacgtaaatagaagataaataaaataagtcaaaccttgaaattaaagcaagtatgaaggtaaaagcagggagaaggtcaagcatagcaga |
15179954 |
T |
|
| Q |
210 |
tgctagtgtgggagagctacattcaattccagtattcgttaaaatctgcactgcagtactgcacaggtaggtagctcaagatcaatcaaacaatcaaatt |
309 |
Q |
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| T |
15179953 |
tgctagtgtgggagagctacattcaattccagtattcgttaaaatctgcactgcagtactgcacaggtaggtagctcaagatcaatcaaacaatcaaatt |
15179854 |
T |
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| Q |
310 |
ttccacataaatttccttatctacaactaaatttacatccatacaataatattttctttgactcgtatcgagtcagaggatcagatgaaggagaaaatac |
409 |
Q |
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||||||||||||| |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
15179853 |
ttccacataaattcccttctctacaactaaattcatatccatacaataatattttctttgactcgtatcgagtcaaaggatcagatgaaggagaaaatac |
15179754 |
T |
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| Q |
410 |
taatataacaaccgattactaacatttctccgtctaaaaaacatatactatgctatttaacttggtggttgatttgtacatacctgaggcaactaagaag |
509 |
Q |
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| T |
15179753 |
taatataacaaccgattactaacatttatctgtctaaaaaacatataccatgctatttaatttggtgatagatttgtacatacctgaggcaactaagaag |
15179654 |
T |
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| Q |
510 |
aaacattctacataaaattggtaatgaaattgaaggaggggctctttttctgtggtag |
567 |
Q |
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| T |
15179653 |
aaacattctacataaaattgatgatgaaattgaaggaggggctctttttctgtggtag |
15179596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 632 - 714
Target Start/End: Complemental strand, 15179531 - 15179449
Alignment:
| Q |
632 |
tactcattccatcattggtggctgctttgatcagagtgttaccacccacttctaggaattgaactgcaaccattgttgctgtt |
714 |
Q |
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| T |
15179531 |
tactcattccatcattggtggctgctttgatcagagtgttaccacccacttctaggaattgaactgcaaccattgttgctgtt |
15179449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 151 - 274
Target Start/End: Complemental strand, 15189688 - 15189565
Alignment:
| Q |
151 |
aaccttgaaattaaagcaagtatgaaggtaaaagctgggagaaggtcaagcatagcagatgctagtgtgggagagctacattcaattccagtattcgtta |
250 |
Q |
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| T |
15189688 |
aaccttgaaattacagcaagtatgaacgtgaaagcagggacaaggtcaaccatagcagatgccaatgtgggagagctatatccaattccagtattcatta |
15189589 |
T |
|
| Q |
251 |
aaatctgcactgcagtactgcaca |
274 |
Q |
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| T |
15189588 |
aaatctgcactgcagtactgcaca |
15189565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 632 - 714
Target Start/End: Complemental strand, 15201184 - 15201102
Alignment:
| Q |
632 |
tactcattccatcattggtggctgctttgatcagagtgttaccacccacttctaggaattgaactgcaaccattgttgctgtt |
714 |
Q |
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||||||||||||| |||||||||||||| || ||||| | |||||||||||| | ||||||| |||||| ||||| ||||||| |
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| T |
15201184 |
tactcattccatctttggtggctgctttcattagagtatcaccacccacttccacgaattgagctgcaatcattgctgctgtt |
15201102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 15201648 - 15201610
Alignment:
| Q |
152 |
accttgaaattaaagcaagtatgaaggtaaaagctggga |
190 |
Q |
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| T |
15201648 |
accttgaaattatagcaagtatgaaggtaaaagcaggga |
15201610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 632 - 714
Target Start/End: Complemental strand, 15208256 - 15208174
Alignment:
| Q |
632 |
tactcattccatcattggtggctgctttgatcagagtgttaccacccacttctaggaattgaactgcaaccattgttgctgtt |
714 |
Q |
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||||||||||||| || ||||||| ||| || ||||| | |||||||||||| | || |||| |||||| |||||||| |||| |
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| T |
15208256 |
tactcattccatctttagtggctgatttcattagagtttcaccacccacttcaacgatttgagctgcaatcattgttgttgtt |
15208174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 15208595 - 15208557
Alignment:
| Q |
152 |
accttgaaattaaagcaagtatgaaggtaaaagctggga |
190 |
Q |
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|||||||||||| ||||||||||||||||||||| |||| |
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| T |
15208595 |
accttgaaattatagcaagtatgaaggtaaaagcaggga |
15208557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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